Rh7BG373200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
40139747 .. 40141844
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG373200.1

Sequence Viewer

Length: 516 bp
ATGGACAAGGTAGTTGATGATTCACCAGTTCAGTCAATTGACAACAATGAAAAGTGCATTGCGGAGCCAGCTGAAGAAAGTCCTCCGGGAAGAAAGGCTCAAAAGAGAGGAGAAAGTTTCAAGGGGAAGATTAGCGAAAAACAATATCGATATATTCAAGCAATGGAAAACATTGCATTCAATAGTGAAGCTAGTAGAGAGGCCACAAGTATCAGAGATGAAGAAAATAGAAAGCACATCGAGTGGCAGCAACAAATGGAAGTGGAAAAGCAACAACTAGAACTACAAAAAGTGCAACTAGAAATCCAAAAGGAGGAAAATTGGGTTATGGCTAAAGACATTAGCACAATGACTCCAGAATCAAAAGCATCTTGGAAGAAAAGAAAGAAGCTATCCGTGACAAAACCTCAGATGATTGGGAGGAGTCCTCATGAAACATTCAACTCTTTAGCATCTATAATTCCTGAGCCATCAGTGTCGAACAACTCGAAACCTTCAAATCAAATATTCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.71

Weight (kDa)

6.77

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 5 cut(s) 121, 158, 181, 442, 498
AluBI AGCT 3 cut(s) 71, 191, 391
AluI AGCT 3 cut(s) 71, 191, 391
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 15
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 478
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 3 cut(s) 192, 278, 299
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 377, 461
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpmI CTGGAG 1 cut(s) 339
Bpu10I CCTNAGC 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 337, 367
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 1 cut(s) 26
Bse3DI GCAATG 3 cut(s) 57, 168, 171
BseCI ATCGAT 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMI GCAATG 3 cut(s) 57, 168, 171
BseMII CTCAG 2 cut(s) 422, 456
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 123, 436
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 148
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 313
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 203
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 421, 457
BspDI ATCGAT 1 cut(s) 148
BspHI TCATGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 66
BsrDI GCAATG 3 cut(s) 57, 168, 171
BsrI ACTGG 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 408, 465
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 1 cut(s) 203
BsuTUI ATCGAT 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 148
CviAII CATG 1 cut(s) 431
CviJI RGCY 8 cut(s) 67, 71, 98, 191, 203, 332, 391, 469
CviKI_1 RGCY 8 cut(s) 67, 71, 98, 191, 203, 332, 391, 469
DdeI CTNAG 2 cut(s) 408, 465
Eco57I CTGAAG 1 cut(s) 93
FaeI CATG 1 cut(s) 434
FaiI YATR 4 cut(s) 153, 329, 432, 458
FatI CATG 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 3 cut(s) 192, 278, 299
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 434
HinfI GANTC 4 cut(s) 20, 352, 359, 424
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 215, 411
Hpy188III TCNNGA 3 cut(s) 356, 431, 464
HpyAV CCTTC 1 cut(s) 504
HpyCH4V TGCA 3 cut(s) 57, 176, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 408, 465
Hsp92II CATG 1 cut(s) 434
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 39, 81, 99, 369, 477
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 377, 461
MaeI CTAG 3 cut(s) 192, 278, 299
MaeIII GTNAC 1 cut(s) 397
MboII GAAGA 5 cut(s) 86, 102, 139, 233, 388
MfeI CAATTG 1 cut(s) 36
MluCI AATT 3 cut(s) 36, 319, 459
MlyI GAGTC 2 cut(s) 346, 433
MnlI CCTC 7 cut(s) 93, 101, 193, 307, 414, 417, 438
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 87
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 397
PagI TCATGA 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 485
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 20, 359
PfoI TCCNGGA 1 cut(s) 85
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 2 cut(s) 346, 432
PpsI GAGTC 2 cut(s) 346, 432
PspN4I GGNNCC 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 71
SatI GCNGC 1 cut(s) 248
SchI GAGTC 2 cut(s) 346, 433
ScrFI CCNGG 1 cut(s) 87
SetI ASST 6 cut(s) 12, 73, 193, 393, 409, 496
SfaNI GCATC 2 cut(s) 377, 461
Sse9I AATT 3 cut(s) 36, 319, 459
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 507
SspMI CTAG 3 cut(s) 192, 278, 299
StyD4I CCNGG 1 cut(s) 85
TaqI TCGA 4 cut(s) 148, 240, 479, 488
TasI AATT 3 cut(s) 36, 319, 459
TfiI GAWTC 2 cut(s) 20, 359
TscAI CASTG 1 cut(s) 480
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 3 cut(s) 63, 234, 447
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 1 cut(s) 480
XspI CTAG 3 cut(s) 192, 278, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.