pycom12g12790

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
15194998 .. 15195732
735 bp
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UTR
Exon/CDS
Intron
pycom12g12790.2

Sequence Viewer

Length: 504 bp
ATGACTTCGTGGAAGCTCAGTGAAGATGTTACGTTGTGTGAATGTTGGGTTCGCACTACTCATGACCCGATTACGGGTAATGAGATGGATAAGCGAGAAATGTGGAGTAAAATTACGAAATCGTTTTGCGATGTACATGGAAAAGATGCCAGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGCCATCTCTCATACTTCTGGTAATCTGCGTAGTGGGACAAGTTTAGCAGATGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCATAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCACCAGAAGCAGACACAGCCAAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGCCAGAGACCTAA

Protein Analysis

168

Amino Acids

18.89

Weight (kDa)

6.3

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 479
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 73, 74
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 3 cut(s) 170, 322, 464
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 263, 491
AsiGI ACCGGT 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 158, 471
BccI CCATC 2 cut(s) 79, 227
BcoDI GTCTC 2 cut(s) 263, 491
BfaI CTAG 2 cut(s) 156, 360
BglII AGATCT 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 383
BmsI GCATC 2 cut(s) 136, 203
BpiI GAAGAC 2 cut(s) 158, 471
BsaHI GRCGYC 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 491
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 74
Bse118I RCCGGY 1 cut(s) 380
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 73, 74
BseMII CTCAG 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 380
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 2 cut(s) 265, 490
BslI CCNNNNNNNGG 2 cut(s) 73, 74
BsmAI GTCTC 2 cut(s) 263, 491
BsmFI GGGAC 2 cut(s) 265, 490
BsmI GAATGC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 491
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 380
BssMI GATC 1 cut(s) 152
BssNI GRCGYC 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 404, 419
BstACI GRCGYC 1 cut(s) 479
BstAUI TGTACA 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 2 cut(s) 263, 491
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstV2I GAAGAC 2 cut(s) 158, 471
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 1 cut(s) 383
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 134
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 3 cut(s) 62, 137, 397
CviJI RGCY 3 cut(s) 16, 440, 452
CviKI_1 RGCY 3 cut(s) 16, 440, 452
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 383
FaeI CATG 3 cut(s) 65, 140, 400
FaiI YATR 6 cut(s) 63, 138, 228, 309, 398, 407
FaqI GGGAC 2 cut(s) 265, 490
FatI CATG 3 cut(s) 61, 136, 396
FblI GTMKAC 1 cut(s) 412
FokI GGATG 1 cut(s) 181
FspBI CTAG 2 cut(s) 156, 360
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 487
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 3 cut(s) 65, 140, 400
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 414
Hpy166II GTNNAC 2 cut(s) 413, 422
Hpy188III TCNNGA 2 cut(s) 62, 386
Hpy8I GTNNAC 2 cut(s) 413, 422
HpyAV CCTTC 1 cut(s) 467
HpyCH4III ACNGT 2 cut(s) 404, 419
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 299, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 3 cut(s) 65, 140, 400
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 6 cut(s) 163, 219, 394, 399, 438, 495
LweI GCATC 2 cut(s) 136, 203
MaeI CTAG 2 cut(s) 156, 360
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 28
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 3 cut(s) 35, 158, 476
MflI RGATCY 1 cut(s) 152
MluCI AATT 3 cut(s) 111, 342, 369
MmeI TCCRAC 2 cut(s) 158, 188
MspI CCGG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 1 cut(s) 152
NlaIII CATG 3 cut(s) 65, 140, 400
PagI TCATGA 1 cut(s) 61
PctI GAATGC 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 380
PspPI GGNCC 1 cut(s) 383
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 383
SetI ASST 5 cut(s) 18, 35, 166, 175, 503
SfaNI GCATC 2 cut(s) 136, 203
SinI GGWCC 1 cut(s) 383
Sse9I AATT 3 cut(s) 111, 342, 369
SspMI CTAG 2 cut(s) 156, 360
TaaI ACNGT 2 cut(s) 404, 419
TaiI ACGT 1 cut(s) 35
TasI AATT 3 cut(s) 111, 342, 369
TatI WGTACW 1 cut(s) 133
TscAI CASTG 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 412
XspI CTAG 2 cut(s) 156, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.