Rmu_sc0013113.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013113.1
OG0000206
Physical Location & Seq
Reverse (-)
8242 .. 9730
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013113.1_g000005.1.cds

Sequence Viewer

Length: 609 bp
atgaatcaaaaattgattcctggactaagtgtgatcgccggccctgcctctggcgccgccacagtccaccaccagcttagggctagcacaatccctatccatgcacatcatggtgatggcgcccttggtgatactgcaatcaccaactttgcttcaattagcgtttcagatgctcaggctcaaccacaattctcattgatgaatcaaactcaagggatcttcatgaaaaaatatcccaagaaatttgataaatttgaatgttgggagaaagttaagtaccacccgtattttgttgatccaccatctaatcctcaaccaccggcatcatattcgacagctactgcctccgaaaatgagtctccaattgagttggatgatgatatcgtttcggagacaccatcaagctccatgccaagaccaaggggacaaaagagagccaaagaagcaaagaagaaaggaaagaaggtgcaagatgcagctgaaagtatggctcttgctattcaagtcatggccgaatcaacccaaacttctgttgagctagtgaagaaaagaaacgaagaaatggctgctcacacaaagaatgtatttgaatttgaagagtcgaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.13

Weight (kDa)

7.07

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 119
AciI CCGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 224, 290
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 3 cut(s) 242, 251, 590
AcyI GRCGYC 2 cut(s) 54, 120
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 2 cut(s) 50, 79
AgsI TTSAA 5 cut(s) 156, 257, 503, 590, 596
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 5 cut(s) 76, 338, 405, 479, 538
AluI AGCT 5 cut(s) 76, 338, 405, 479, 538
Alw26I GTCTC 2 cut(s) 363, 386
AlwI GGATC 2 cut(s) 224, 290
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 2 cut(s) 40, 510
ApeKI GCWGC 2 cut(s) 476, 566
ApoI RAATTY 3 cut(s) 242, 251, 590
AspLEI GCGC 2 cut(s) 56, 122
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 125, 133, 140
AsuNHI GCTAGC 1 cut(s) 83
BanI GGYRCC 2 cut(s) 53, 119
BbvI GCAGC 2 cut(s) 488, 553
BccI CCATC 3 cut(s) 110, 310, 406
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 2 cut(s) 363, 386
BfaI CTAG 2 cut(s) 84, 539
BfoI RGCGCY 2 cut(s) 57, 123
BisI GCNGC 3 cut(s) 57, 477, 567
BlsI GCNGC 3 cut(s) 58, 478, 568
Bme1390I CCNGG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 55, 121
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 3 cut(s) 160, 332, 463
BmtI GCTAGC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 77, 174
BpuEI CTTGAG 1 cut(s) 195
BsaHI GRCGYC 2 cut(s) 54, 120
BsaJI CCNNGG 2 cut(s) 124, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 79
Bse118I RCCGGY 2 cut(s) 38, 319
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 124, 419
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 2 cut(s) 50, 79
BseMII CTCAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 488, 553
BshFI GGCC 2 cut(s) 42, 512
BshNI GGYRCC 2 cut(s) 53, 119
BsiSI CCGG 2 cut(s) 39, 320
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 50, 79
BsmAI GTCTC 2 cut(s) 363, 386
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 2 cut(s) 42, 512
Bsp143I GATC 3 cut(s) 33, 216, 295
BspACI CCGC 1 cut(s) 57
BspANI GGCC 2 cut(s) 42, 512
BspCNI CTCAG 1 cut(s) 187
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 55, 121
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 2 cut(s) 224, 290
BspT107I GGYRCC 2 cut(s) 53, 119
BsrFI RCCGGY 2 cut(s) 38, 319
BssAI RCCGGY 2 cut(s) 38, 319
BssECI CCNNGG 2 cut(s) 124, 419
BssMI GATC 3 cut(s) 33, 216, 295
BssNI GRCGYC 2 cut(s) 54, 120
BssT1I CCWWGG 2 cut(s) 124, 419
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 2 cut(s) 54, 120
BstC8I GCNNGC 2 cut(s) 40, 85
BstDEI CTNAG 3 cut(s) 26, 77, 174
BstF5I GGATG 1 cut(s) 379
BstH2I RGCGCY 2 cut(s) 57, 123
BstHHI GCGC 2 cut(s) 56, 122
BstKTI GATC 3 cut(s) 36, 219, 298
BstMAI GTCTC 2 cut(s) 363, 386
BstMBI GATC 3 cut(s) 33, 216, 295
BstMWI GCNNNNNNNGC 3 cut(s) 44, 53, 443
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 488, 553
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 2 cut(s) 42, 512
BtsCI GGATG 1 cut(s) 379
Cac8I GCNNGC 2 cut(s) 40, 85
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 222
CfoI GCGC 2 cut(s) 56, 122
Cfr10I RCCGGY 2 cut(s) 38, 319
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 1 cut(s) 277
CviAII CATG 5 cut(s) 101, 110, 223, 409, 508
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 3 cut(s) 26, 77, 174
DinI GGCGCC 2 cut(s) 55, 121
DpnI GATC 3 cut(s) 35, 218, 297
DpnII GATC 3 cut(s) 33, 216, 295
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco130I CCWWGG 2 cut(s) 124, 419
Eco32I GATATC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 19
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 124, 419
EgeI GGCGCC 2 cut(s) 55, 121
EheI GGCGCC 2 cut(s) 55, 121
ErhI CCWWGG 2 cut(s) 124, 419
FaeI CATG 5 cut(s) 104, 113, 226, 412, 511
FaiI YATR 7 cut(s) 102, 111, 224, 328, 410, 488, 509
FaqI GGGAC 1 cut(s) 438
FatI CATG 5 cut(s) 100, 109, 222, 408, 507
Fnu4HI GCNGC 3 cut(s) 57, 477, 567
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 3 cut(s) 57, 477, 567
FspBI CTAG 2 cut(s) 84, 539
GlaI GCGC 2 cut(s) 55, 121
GluI GCNGC 3 cut(s) 57, 477, 567
HaeII RGCGCY 2 cut(s) 57, 123
HaeIII GGCC 2 cut(s) 42, 512
HapII CCGG 2 cut(s) 39, 320
HhaI GCGC 2 cut(s) 56, 122
Hin1I GRCGYC 2 cut(s) 54, 120
Hin1II CATG 5 cut(s) 104, 113, 226, 412, 511
Hin6I GCGC 2 cut(s) 54, 120
HinP1I GCGC 2 cut(s) 54, 120
HinfI GANTC 6 cut(s) 4, 16, 202, 356, 515, 599
HpaII CCGG 2 cut(s) 39, 320
HphI GGTGA 3 cut(s) 125, 133, 140
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 169, 349, 391
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 104, 137, 469, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 53, 443
HpyF3I CTNAG 3 cut(s) 26, 77, 174
Hsp92I GRCGYC 2 cut(s) 54, 120
Hsp92II CATG 5 cut(s) 104, 113, 226, 412, 511
HspAI GCGC 2 cut(s) 54, 120
KasI GGCGCC 2 cut(s) 53, 119
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 3 cut(s) 33, 216, 295
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 8 cut(s) 6, 33, 36, 52, 57, 86, 161, 333
Lsp1109I GCAGC 2 cut(s) 488, 553
LweI GCATC 3 cut(s) 160, 332, 463
MaeI CTAG 2 cut(s) 84, 539
MalI GATC 3 cut(s) 35, 218, 297
MboI GATC 3 cut(s) 33, 216, 295
MboII GAAGA 5 cut(s) 211, 463, 556, 569, 608
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 216
MluCI AATT 7 cut(s) 11, 156, 188, 242, 251, 363, 590
Mly113I GGCGCC 2 cut(s) 54, 120
MlyI GAGTC 2 cut(s) 365, 608
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 3 cut(s) 58, 321, 355
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 2 cut(s) 111, 114
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 39, 320
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 44, 53, 443
NaeI GCCGGC 1 cut(s) 40
NarI GGCGCC 2 cut(s) 54, 120
NdeII GATC 3 cut(s) 33, 216, 295
NgoMIV GCCGGC 1 cut(s) 38
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 5 cut(s) 104, 113, 226, 412, 511
NlaIV GGNNCC 2 cut(s) 55, 121
PagI TCATGA 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 4 cut(s) 4, 16, 202, 515
PfoI TCCNGGA 1 cut(s) 19
PkrI GCNGC 3 cut(s) 58, 478, 568
PleI GAGTC 2 cut(s) 364, 607
PluTI GGCGCC 2 cut(s) 57, 123
PpsI GAGTC 2 cut(s) 364, 607
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 55, 121
PspPI GGNCC 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 2 cut(s) 111, 114
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 3 cut(s) 57, 477, 567
Sau3AI GATC 3 cut(s) 33, 216, 295
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 365, 608
ScrFI CCNGG 1 cut(s) 21
SetI ASST 6 cut(s) 78, 340, 407, 468, 481, 540
SfaNI GCATC 3 cut(s) 160, 332, 463
SfoI GGCGCC 2 cut(s) 55, 121
SmiMI CAYNNNNRTG 2 cut(s) 111, 114
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
Sse9I AATT 7 cut(s) 11, 156, 188, 242, 251, 363, 590
SsiI CCGC 1 cut(s) 57
SspDI GGCGCC 2 cut(s) 53, 119
SspMI CTAG 2 cut(s) 84, 539
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 2 cut(s) 124, 419
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 2 cut(s) 332, 602
TasI AATT 7 cut(s) 11, 156, 188, 242, 251, 363, 590
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 4 cut(s) 4, 16, 202, 515
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TseI GCWGC 2 cut(s) 476, 566
TspDTI ATGAA 4 cut(s) 17, 211, 215, 239
XapI RAATTY 3 cut(s) 242, 251, 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 107
XspI CTAG 2 cut(s) 84, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.