Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

27349098 .. 27350055

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGAGATCCAGGTACTAATTGGCAAGTTGATGAAGAAATTCAATTATGCGATTCGTGGGCGCGTAAAACCGTTTGTCCCATCACCAGCAAAGCTATAACCGCCACTGGGTTATGGGAAAAAGTTCATGCCGATTACATTGAAAATTGGCAAGGTCCACCAAGCACCCGATCCCCTCAAGCTCTCCAATCTCATTTTCGAGGGTTGAAGAAAATGCTCAAAGATTGGCACAATTCACAAATGACTTCCCGTAACCGTATAGCAAGCGGCACCAATCAAATGGACGAGGAAAATCAAACTCAAGGGATCTTCATGAAAAAATATCCAAAACCCTTTGATAAATTTGGATGTTGGAATGTAATTAAGCACCACCCGTATTTCAAAGATCCACCATCTAATCCTCAACCTCCGGACTTGGATGATGATATAGTTTTGGAGACACCCTCAAGCTCTGAACCAAGACCTATGGGACAAAAGAGAGCCAAAGAAGCAAAGAAGAAAGGAAAGAAGGCACAAGATGCAGCAGAAAGTATGGCTCTTACCATTCAAGCCATGGCTGAGTCAACCCAAGCTTCTGTTGAGCTAGTGAAGAGAAGAAACGAGGAAATGACTGCTCATACAAAGAAGGTATTTGAATTTGAAGAGGCAAAAGAAGACTCAAGAATTATGGCAATGGATACTAATTCCATGACTTCACAATCAAAGGCTTGGTGGAAAAAGAGGAAGAGTGATATCATAGTGAAAACAATGCCCGACAGTGGTAGTAGTGGTGGCTACATACCTGAATTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

264

Amino Acids

30.01

Weight (kDa)

8.28

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	110 - 245	2.5e-08	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AccII	CGCG	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	2 cut(s)	102, 267
AclWI	GGATC	4 cut(s)	2, 165, 314, 380
AcsI	RAATTY	4 cut(s)	39, 341, 635, 785
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	108, 758
AgsI	TTSAA	7 cut(s)	44, 143, 208, 382, 548, 635, 641
AjnI	CCWGG	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	95, 182, 450, 572, 583
AluI	AGCT	5 cut(s)	95, 182, 450, 572, 583
Alw26I	GTCTC	1 cut(s)	431
AlwI	GGATC	4 cut(s)	2, 165, 314, 380
Aor13HI	TCCGGA	1 cut(s)	409
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	4 cut(s)	39, 341, 635, 785
Asp700I	GAANNNNTTC	2 cut(s)	39, 123
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	2 cut(s)	89, 400
BciT130I	CCWGG	1 cut(s)	12
BciVI	GTATCC	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	584
BfuI	GTATCC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	268, 522
BlsI	GCNGC	2 cut(s)	269, 523
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpuEI	CTTGAG	4 cut(s)	162, 285, 430, 643
BsaJI	CCNNGG	1 cut(s)	552
BsaWI	WCCGGW	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 758
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	552
BseGI	GGATG	2 cut(s)	353, 424
BseLI	CCNNNNNNNGG	2 cut(s)	108, 758
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	2 cut(s)	63, 483
BslI	CCNNNNNNNGG	2 cut(s)	108, 758
BsmAI	GTCTC	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	63, 483
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	7, 170, 306, 385
Bsp19I	CCATGG	1 cut(s)	552
BspACI	CCGC	2 cut(s)	102, 267
BspCNI	CTCAG	1 cut(s)	550
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	4 cut(s)	2, 165, 314, 380
BspT107I	GGYRCC	1 cut(s)	269
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	552
BssMI	GATC	4 cut(s)	7, 170, 306, 385
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	73, 257, 758
Bst6I	CTCTTC	3 cut(s)	584, 636, 719
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	353, 424
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	4 cut(s)	10, 173, 309, 388
BstMAI	GTCTC	1 cut(s)	431
BstMBI	GATC	4 cut(s)	7, 170, 306, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 488, 518
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	533
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	3 cut(s)	7, 306, 385
BstXI	CCANNNNNNTGG	1 cut(s)	280
BstYI	RGATCY	3 cut(s)	7, 306, 385
BsuI	GTATCC	1 cut(s)	670
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	353, 424
BtsIMutI	CAGTG	2 cut(s)	105, 763
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	1 cut(s)	312
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	4 cut(s)	128, 313, 553, 688
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	4 cut(s)	9, 172, 308, 387
DpnII	GATC	4 cut(s)	7, 170, 306, 385
Eam1104I	CTCTTC	3 cut(s)	584, 636, 719
EarI	CTCTTC	3 cut(s)	584, 636, 719
Eco130I	CCWWGG	1 cut(s)	552
Eco32I	GATATC	1 cut(s)	733
Eco47I	GGWCC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	10
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	131, 316, 556, 691
FaqI	GGGAC	2 cut(s)	63, 483
FatI	CATG	4 cut(s)	127, 312, 552, 687
Fnu4HI	GCNGC	2 cut(s)	268, 522
FokI	GGATG	2 cut(s)	360, 431
Fsp4HI	GCNGC	2 cut(s)	268, 522
FspBI	CTAG	1 cut(s)	584
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	268, 522
HapII	CCGG	1 cut(s)	410
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	131, 316, 556, 691
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	3 cut(s)	53, 560, 656
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	158, 564
Hpy188I	TCNGA	1 cut(s)	454
Hpy188III	TCNNGA	3 cut(s)	313, 410, 660
Hpy8I	GTNNAC	2 cut(s)	158, 564
HpyAV	CCTTC	2 cut(s)	502, 619
HpyCH4III	ACNGT	3 cut(s)	73, 257, 758
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 488, 518
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	4 cut(s)	131, 316, 556, 691
HspAI	GCGC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	7, 170, 306, 385
LpnPI	CCDG	4 cut(s)	24, 93, 100, 423
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	584
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	9, 172, 308, 387
MboI	GATC	4 cut(s)	7, 170, 306, 385
MboII	GAAGA	9 cut(s)	47, 220, 301, 508, 601, 606, 653, 665, 736
MflI	RGATCY	3 cut(s)	7, 306, 385
MlyI	GAGTC	2 cut(s)	569, 650
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	9 cut(s)	186, 194, 280, 411, 417, 454, 595, 637, 714
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	2 cut(s)	39, 123
MseI	TTAA	1 cut(s)	363
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	101, 488, 518
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	4 cut(s)	7, 170, 306, 385
NlaIII	CATG	4 cut(s)	131, 316, 556, 691
NlaIV	GGNNCC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	312
PdmI	GAANNNNTTC	2 cut(s)	39, 123
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	269, 523
PleI	GAGTC	2 cut(s)	568, 650
PpsI	GAGTC	2 cut(s)	568, 650
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	3 cut(s)	7, 306, 385
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	268, 522
Sau3AI	GATC	4 cut(s)	7, 170, 306, 385
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	569, 650
ScrFI	CCNGG	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	508
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	4 cut(s)	177, 300, 445, 658
SmoI	CTYRAG	4 cut(s)	177, 300, 445, 658
SsiI	CCGC	2 cut(s)	102, 267
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	73, 257, 758
TaqI	TCGA	1 cut(s)	199
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	112, 763
TseI	GCWGC	1 cut(s)	521
TspDTI	ATGAA	4 cut(s)	48, 116, 301, 329
TspRI	CASTG	2 cut(s)	112, 763
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	4 cut(s)	39, 341, 635, 785
XcmI	CCANNNNNNNNNTGG	2 cut(s)	18, 550
XmnI	GAANNNNTTC	2 cut(s)	39, 123
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.