pycom09g11440

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
9657223 .. 9659193
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11440.2

Sequence Viewer

Length: 1173 bp
ATGCTGACGCCAGGTAAAAAAAGCAAAAAAAATTCAAAAAAATTCAAAAAAAAATCTGAAAAAAATTGTAAAAAAAATTGTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTACCTTACACAACAATTTCATATTTTCTCAACTACTTTCAATCACATTCCTTTCTTTGTCTCAAAGTTTGAATCCATTTTTTTTCAACAAAATGACCACTGGTGCAGGTACGAATTGGTCGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTTTCTTGGGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCTTTGGCACAAGCTAGTAGTAATATTCGAAGTGGAGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAATTGTGCACGTCGGTCCAGAAGTGCACATGAACAGCACCCCTCTACACTCTACACCCGATCATGTTAATGAAGATGATGCAGAACAAGTGCCCGAAACGCCCCTCCCTGAACAAGCATCGGGTTCGACCCGTTTTCCAATTAGGCCTGAAGGTAAGAAGGCTTCAAAGAGAAAAGGGAGTGCTTCGAAGAACGATTATGCAAAGTTCATGGAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCGAGGGACCTGGCGAAAGATGAGGCTGATAAGGCTAGAGAGGCATCAAAACAAGCAGCTGTTGAGAGAGAATTTTATGCTAATGAGAGAGAAAGAGAGCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAACAAGATCGTGAGATTATGAACATGTCTTTAGAAGGGAAGTCTCCAAATTCAAAATATTTTTGGAAGTCAGAGAAAGCGGACGTGGTGCGAAGGAGGCGTGCAAGAGAAACGATAGCAAGCCAAGGTGGTTCTAGCACCACAAGAGAAGATCATCCTACCACCACAAATTGGTTAAGTGATGATGAATAG

Protein Analysis

391

Amino Acids

44.85

Weight (kDa)

9.4

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AccB7I CCANNNNNTGG 2 cut(s) 396, 1152
AciI CCGC 1 cut(s) 1061
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 5 cut(s) 31, 41, 587, 908, 1030
AcuI CTGAAG 1 cut(s) 762
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 4 cut(s) 226, 262, 424, 512
AfiI CCNNNNNNNGG 2 cut(s) 396, 1152
AflIII ACRYGT 2 cut(s) 958, 1005
AgeI ACCGGT 1 cut(s) 549
AjiI CACGTC 2 cut(s) 604, 1066
AjnI CCWGG 2 cut(s) 10, 846
AluBI AGCT 5 cut(s) 267, 449, 506, 896, 937
AluI AGCT 5 cut(s) 267, 449, 506, 896, 937
Alw21I GWGCWC 2 cut(s) 603, 621
Alw26I GTCTC 3 cut(s) 180, 426, 1029
Alw44I GTGCAC 2 cut(s) 599, 617
AlwI GGATC 1 cut(s) 492
AoxI GGCC 1 cut(s) 737
ApaLI GTGCAC 2 cut(s) 599, 617
ApeKI GCWGC 2 cut(s) 515, 893
ApoI RAATTY 5 cut(s) 31, 41, 587, 908, 1030
AsiGI ACCGGT 1 cut(s) 549
AspS9I GGNCC 2 cut(s) 608, 844
AsuHPI GGTGA 1 cut(s) 836
AsuII TTCGAA 2 cut(s) 463, 779
AvaII GGWCC 2 cut(s) 608, 844
BaeGI GKGCMC 3 cut(s) 603, 621, 687
BanII GRGCYC 1 cut(s) 982
BarI GAAGNNNNNNTAC 2 cut(s) 739, 771
Bbv12I GWGCWC 2 cut(s) 603, 621
BbvI GCAGC 2 cut(s) 502, 905
BcgI CGANNNNNNTGC 2 cut(s) 699, 733
BciT130I CCWGG 2 cut(s) 12, 848
BcoDI GTCTC 3 cut(s) 180, 426, 1029
BfaI CTAG 4 cut(s) 264, 450, 873, 1116
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 2 cut(s) 516, 894
BlsI GCNGC 2 cut(s) 517, 895
Bme1390I CCNGG 2 cut(s) 12, 848
Bme18I GGWCC 2 cut(s) 608, 844
BmgBI CACGTC 2 cut(s) 604, 1066
BmgT120I GGNCC 2 cut(s) 608, 844
BmiI GGNNCC 1 cut(s) 845
BmrFI CCNGG 2 cut(s) 12, 848
BmsI GCATC 4 cut(s) 297, 661, 719, 890
Bpu14I TTCGAA 2 cut(s) 463, 779
Bsa29I ATCGAT 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 820, 1105
BsaWI WCCGGW 1 cut(s) 549
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 1152
Bse118I RCCGGY 1 cut(s) 549
Bse1I ACTGG 2 cut(s) 220, 390
BseBI CCWGG 2 cut(s) 12, 848
BseCI ATCGAT 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 820, 1105
BseGI GGATG 1 cut(s) 1135
BseLI CCNNNNNNNGG 2 cut(s) 396, 1152
BseNI ACTGG 2 cut(s) 220, 390
BseSI GKGCMC 3 cut(s) 603, 621, 687
BseXI GCAGC 2 cut(s) 502, 905
BseYI CCCAGC 1 cut(s) 267
BsgI GTGCAG 1 cut(s) 240
BshFI GGCC 1 cut(s) 739
BshTI ACCGGT 1 cut(s) 549
BshVI ATCGAT 1 cut(s) 383
BsiHKAI GWGCWC 2 cut(s) 603, 621
BsiSI CCGG 1 cut(s) 550
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 2 cut(s) 396, 1152
BsmAI GTCTC 3 cut(s) 180, 426, 1029
BsmBI CGTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 857
BsnI GGCC 1 cut(s) 739
Bsp119I TTCGAA 2 cut(s) 463, 779
Bsp1286I GDGCHC 4 cut(s) 603, 621, 687, 982
Bsp143I GATC 4 cut(s) 484, 652, 988, 1132
BspACI CCGC 1 cut(s) 1061
BspANI GGCC 1 cut(s) 739
BspDI ATCGAT 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 845
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 1 cut(s) 492
BspT104I TTCGAA 2 cut(s) 463, 779
BsrFI RCCGGY 1 cut(s) 549
BsrI ACTGG 2 cut(s) 220, 390
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 820, 1105
BssMI GATC 4 cut(s) 484, 652, 988, 1132
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 2 cut(s) 820, 1105
Bst2UI CCWGG 2 cut(s) 12, 848
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 426
BstBI TTCGAA 2 cut(s) 463, 779
BstC8I GCNNGC 2 cut(s) 1083, 1102
BstDEI CTNAG 2 cut(s) 407, 941
BstF5I GGATG 1 cut(s) 1135
BstKTI GATC 4 cut(s) 487, 655, 991, 1135
BstMAI GTCTC 3 cut(s) 180, 426, 1029
BstMBI GATC 4 cut(s) 484, 652, 988, 1132
BstMWI GCNNNNNNNGC 6 cut(s) 512, 691, 869, 878, 943, 1078
BstNI CCWGG 2 cut(s) 12, 848
BstNSI RCATGY 2 cut(s) 962, 1009
BstSCI CCNGG 2 cut(s) 10, 846
BstSLI GKGCMC 3 cut(s) 603, 621, 687
BstV1I GCAGC 2 cut(s) 502, 905
Bsu15I ATCGAT 1 cut(s) 383
BsuRI GGCC 1 cut(s) 739
BsuTUI ATCGAT 1 cut(s) 383
BtrI CACGTC 2 cut(s) 604, 1066
BtsCI GGATG 1 cut(s) 1135
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 1083, 1102
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 2 cut(s) 608, 844
ClaI ATCGAT 1 cut(s) 383
CseI GACGC 2 cut(s) 16, 443
Csp6I GTAC 4 cut(s) 225, 261, 423, 511
CspAI ACCGGT 1 cut(s) 549
CviAII CATG 5 cut(s) 622, 656, 802, 959, 1006
CviQI GTAC 4 cut(s) 225, 261, 423, 511
DdeI CTNAG 2 cut(s) 407, 941
DpnI GATC 4 cut(s) 486, 654, 990, 1134
DpnII GATC 4 cut(s) 484, 652, 988, 1132
Eco130I CCWWGG 2 cut(s) 820, 1105
Eco147I AGGCCT 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 608, 844
Eco57I CTGAAG 1 cut(s) 762
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 2 cut(s) 10, 846
EcoT14I CCWWGG 2 cut(s) 820, 1105
EcoT38I GRGCYC 1 cut(s) 982
ErhI CCWWGG 2 cut(s) 820, 1105
Esp3I CGTCTC 1 cut(s) 426
FaeI CATG 5 cut(s) 625, 659, 805, 962, 1009
FaqI GGGAC 1 cut(s) 857
FatI CATG 5 cut(s) 621, 655, 801, 958, 1005
Fnu4HI GCNGC 2 cut(s) 516, 894
FokI GGATG 1 cut(s) 1122
FriOI GRGCYC 1 cut(s) 982
Fsp4HI GCNGC 2 cut(s) 516, 894
FspBI CTAG 4 cut(s) 264, 450, 873, 1116
GluI GCNGC 2 cut(s) 516, 894
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 739
HapII CCGG 1 cut(s) 550
HgaI GACGC 2 cut(s) 16, 443
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 5 cut(s) 625, 659, 805, 962, 1009
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 187, 328, 380
HpaII CCGG 1 cut(s) 550
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 3 cut(s) 261, 601, 619
Hpy188I TCNGA 3 cut(s) 58, 484, 1054
Hpy188III TCNNGA 3 cut(s) 488, 611, 992
Hpy8I GTNNAC 3 cut(s) 261, 601, 619
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 5 cut(s) 112, 737, 745, 1010, 1068
HpyCH4IV ACGT 3 cut(s) 425, 603, 1065
HpyCH4V TGCA 7 cut(s) 221, 310, 601, 619, 674, 794, 1085
HpyF10VI GCNNNNNNNGC 6 cut(s) 512, 691, 869, 878, 943, 1078
HpyF3I CTNAG 2 cut(s) 407, 941
HpySE526I ACGT 3 cut(s) 425, 603, 1065
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 5 cut(s) 625, 659, 805, 962, 1009
Kzo9I GATC 4 cut(s) 484, 652, 988, 1132
Lsp1109I GCAGC 2 cut(s) 502, 905
LweI GCATC 4 cut(s) 297, 661, 719, 890
MaeI CTAG 4 cut(s) 264, 450, 873, 1116
MaeII ACGT 3 cut(s) 425, 603, 1065
MaeIII GTNAC 1 cut(s) 277
MalI GATC 4 cut(s) 486, 654, 990, 1134
MboI GATC 4 cut(s) 484, 652, 988, 1132
MboII GAAGA 6 cut(s) 257, 677, 793, 818, 980, 1142
MhlI GDGCHC 4 cut(s) 603, 621, 687, 982
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 2 cut(s) 377, 542
MnlI CCTC 6 cut(s) 645, 707, 834, 853, 871, 1071
MseI TTAA 2 cut(s) 660, 1157
MslI CAYNNNNRTG 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 1 cut(s) 550
MspR9I CCNGG 2 cut(s) 12, 848
MvaI CCWGG 2 cut(s) 12, 848
MwoI GCNNNNNNNGC 6 cut(s) 512, 691, 869, 878, 943, 1078
NdeII GATC 4 cut(s) 484, 652, 988, 1132
NlaIII CATG 5 cut(s) 625, 659, 805, 962, 1009
NlaIV GGNNCC 1 cut(s) 845
NspI RCATGY 2 cut(s) 962, 1009
NspV TTCGAA 2 cut(s) 463, 779
PceI AGGCCT 1 cut(s) 739
PciI ACATGT 2 cut(s) 958, 1005
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PfeI GAWTC 2 cut(s) 187, 380
PflMI CCANNNNNTGG 2 cut(s) 396, 1152
PinAI ACCGGT 1 cut(s) 549
PkrI GCNGC 2 cut(s) 517, 895
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Ppu21I YACGTR 1 cut(s) 426
PpuMI RGGWCCY 1 cut(s) 844
PscI ACATGT 2 cut(s) 958, 1005
Psp5II RGGWCCY 1 cut(s) 844
Psp6I CCWGG 2 cut(s) 10, 846
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 2 cut(s) 10, 846
PspN4I GGNNCC 1 cut(s) 845
PspPI GGNCC 2 cut(s) 608, 844
PspPPI RGGWCCY 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 226, 262, 424, 512
RsaNI GTAC 4 cut(s) 225, 261, 423, 511
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 2 cut(s) 660, 1157
SatI GCNGC 2 cut(s) 516, 894
Sau3AI GATC 4 cut(s) 484, 652, 988, 1132
Sau96I GGNCC 2 cut(s) 608, 844
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 12, 848
SduI GDGCHC 4 cut(s) 603, 621, 687, 982
SfaNI GCATC 4 cut(s) 297, 661, 719, 890
SfuI TTCGAA 2 cut(s) 463, 779
SinI GGWCC 2 cut(s) 608, 844
SmiMI CAYNNNNRTG 1 cut(s) 660
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 1 cut(s) 1061
SspI AATATT 3 cut(s) 460, 568, 1040
SspMI CTAG 4 cut(s) 264, 450, 873, 1116
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 2 cut(s) 10, 846
StyI CCWWGG 2 cut(s) 820, 1105
TaiI ACGT 3 cut(s) 428, 606, 1068
TaqI TCGA 4 cut(s) 383, 463, 719, 779
TaqII GACCGA 1 cut(s) 596
TatI WGTACW 1 cut(s) 260
TfiI GAWTC 2 cut(s) 187, 380
Tru1I TTAA 2 cut(s) 660, 1157
Tru9I TTAA 2 cut(s) 660, 1157
TscAI CASTG 1 cut(s) 220
TseI GCWGC 2 cut(s) 515, 893
TspDTI ATGAA 6 cut(s) 124, 326, 638, 678, 790, 1016
TspRI CASTG 1 cut(s) 220
Van91I CCANNNNNTGG 2 cut(s) 396, 1152
VneI GTGCAC 2 cut(s) 599, 617
VpaK11BI GGWCC 2 cut(s) 608, 844
XapI RAATTY 5 cut(s) 31, 41, 587, 908, 1030
XceI RCATGY 2 cut(s) 962, 1009
XspI CTAG 4 cut(s) 264, 450, 873, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.