Rw1G027440

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000206
Physical Location & Seq
Reverse (-)
54916423 .. 54917394
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027440.1

Sequence Viewer

Length: 798 bp
ATGGGAGATTCGGGTACCAATTGGTCTACCGACGAGCAAATTCAATTGTGTGATTCATGGACACGTAAGACTGTGTGCCCAATCACTGGAAAACAAATAACCTCCTCCAAGTTATGGGAAAAGGTTCATGCTGATTATCTCTCCAATCTCAGTTTTGAACGTTTGAAAAAAATTCTCAAAGATTGGCACAATGCACAAATGACCTCCTGTAATCGTATAGATAGCGGCACCAATAAGATGGACGTGATGAATCAAACTCAAGGGATCTTCATGAAAAAATATCCCAAGAAATTTAATAAATTTGAATGTTGGGAGAAAGTTAAGTACCACCCTTATTTTATTGATCCACCATCTAATCCTCAACCATCGGCATCATATTCGACAGCTACTGCCTCCGAAAATGAGTCTCCAATTGAGTTGGATGATGATATCATTTCGAAGACACCATCAAGCTCCATGCCAAGACCAATGGGACAAAAGAGAGCCAAAGAAGCAAAGAAGAAAGGAAAGAAGGCGCAAGATGCAGCAGAAAGTATGACTCTTGCTATTCAAGCCATGGCCGAATCAACCCAAGCTTCTGTTGAGCTAGTGAAGAAAAGAAACGAAGAAGTGGCCTCTCACACAAAGAAGGTATTTGAATTTGAAGAGGTGAAAGAAGATGCAAGAATTATGGCCATGGATACTAATTCCATGACACCACAATCAAAGGCTTGGTGGAAAAAGAAGAAGGGTGATATTGTAGCAAAAACAATGTCCGATGGTGATAGTAGCGGTTGCTACATAGCCCAATTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

265

Amino Acids

30.02

Weight (kDa)

8.76

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 96 - 246 1.1e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 2 cut(s) 14, 227
AccB7I CCANNNNNTGG 2 cut(s) 86, 114
AccI GTMKAC 1 cut(s) 26
AciI CCGC 2 cut(s) 225, 771
AclI AACGTT 1 cut(s) 160
AclWI GGATC 2 cut(s) 272, 338
AcoI YGGCCR 2 cut(s) 558, 672
AcsI RAATTY 5 cut(s) 39, 171, 290, 299, 638
AfaI GTAC 2 cut(s) 16, 326
AfiI CCNNNNNNNGG 2 cut(s) 86, 114
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 7 cut(s) 44, 158, 166, 305, 551, 638, 644
AjiI CACGTC 1 cut(s) 244
AluBI AGCT 4 cut(s) 386, 453, 575, 586
AluI AGCT 4 cut(s) 386, 453, 575, 586
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 2 cut(s) 272, 338
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 3 cut(s) 558, 612, 672
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 5 cut(s) 39, 171, 290, 299, 638
ArsI GACNNNNNNTTYG 2 cut(s) 737, 769
Asp700I GAANNNNTTC 1 cut(s) 123
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 661, 743, 773
AsuII TTCGAA 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 80
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 2 cut(s) 14, 227
BbsI GAAGAC 1 cut(s) 446
BbvI GCAGC 1 cut(s) 536
BccI CCATC 5 cut(s) 232, 358, 373, 454, 752
BcgI CGANNNNNNTGC 2 cut(s) 360, 394
BciVI GTATCC 1 cut(s) 673
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 1 cut(s) 587
BfuI GTATCC 1 cut(s) 673
BisI GCNGC 2 cut(s) 226, 525
BlsI GCNGC 2 cut(s) 227, 526
BmgBI CACGTC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 16, 229
BmsI GCATC 3 cut(s) 380, 511, 649
BpiI GAAGAC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 243
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 555, 675
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 114
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 555, 675
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 2 cut(s) 86, 114
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 80
BseXI GCAGC 1 cut(s) 536
BshFI GGCC 3 cut(s) 560, 614, 674
BshNI GGYRCC 2 cut(s) 14, 227
BslFI GGGAC 1 cut(s) 486
BslI CCNNNNNNNGG 2 cut(s) 86, 114
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 3 cut(s) 560, 614, 674
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 264, 343
Bsp19I CCATGG 2 cut(s) 555, 675
BspACI CCGC 2 cut(s) 225, 771
BspANI GGCC 3 cut(s) 560, 614, 674
BspCNI CTCAG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 16, 229
BspPI GGATC 2 cut(s) 272, 338
BspT104I TTCGAA 1 cut(s) 437
BspT107I GGYRCC 2 cut(s) 14, 227
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 555, 675
BssMI GATC 2 cut(s) 264, 343
BssT1I CCWWGG 2 cut(s) 555, 675
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 149
BstDSI CCRYGG 2 cut(s) 555, 675
BstF5I GGATG 1 cut(s) 427
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 2 cut(s) 267, 346
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 2 cut(s) 264, 343
BstMWI GCNNNNNNNGC 3 cut(s) 491, 521, 551
BstSLI GKGCMC 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 536
BstV2I GAAGAC 1 cut(s) 446
BstX2I RGATCY 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 264
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 3 cut(s) 560, 614, 674
BtgI CCRYGG 2 cut(s) 555, 675
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 270
CfoI GCGC 1 cut(s) 517
Csp6I GTAC 2 cut(s) 15, 325
CviAII CATG 7 cut(s) 57, 128, 271, 457, 556, 676, 691
CviQI GTAC 2 cut(s) 15, 325
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 266, 345
DpnII GATC 2 cut(s) 264, 343
EaeI YGGCCR 2 cut(s) 558, 672
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 2 cut(s) 555, 675
Eco32I GATATC 1 cut(s) 430
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 2 cut(s) 555, 675
ErhI CCWWGG 2 cut(s) 555, 675
FaeI CATG 7 cut(s) 60, 131, 274, 460, 559, 679, 694
FaqI GGGAC 1 cut(s) 486
FatI CATG 7 cut(s) 56, 127, 270, 456, 555, 675, 690
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 226, 525
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 226, 525
FspBI CTAG 1 cut(s) 587
GlaI GCGC 1 cut(s) 516
GluI GCNGC 2 cut(s) 226, 525
HaeIII GGCC 3 cut(s) 560, 614, 674
HhaI GCGC 1 cut(s) 517
Hin1II CATG 7 cut(s) 60, 131, 274, 460, 559, 679, 694
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 6 cut(s) 8, 53, 250, 404, 538, 563
HphI GGTGA 3 cut(s) 661, 743, 773
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 2 cut(s) 397, 757
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 505, 622, 721
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 3 cut(s) 64, 160, 243
HpyCH4V TGCA 3 cut(s) 194, 524, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 521, 551
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 3 cut(s) 64, 160, 243
Hsp92II CATG 7 cut(s) 60, 131, 274, 460, 559, 679, 694
HspAI GCGC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 264, 343
LmnI GCTCC 1 cut(s) 458
LpnPI CCDG 2 cut(s) 72, 220
Lsp1109I GCAGC 1 cut(s) 536
LweI GCATC 3 cut(s) 380, 511, 649
MaeI CTAG 1 cut(s) 587
MaeII ACGT 3 cut(s) 64, 160, 243
MalI GATC 2 cut(s) 266, 345
MboI GATC 2 cut(s) 264, 343
MboII GAAGA 8 cut(s) 259, 451, 511, 604, 617, 656, 668, 736
MfeI CAATTG 3 cut(s) 19, 44, 411
MflI RGATCY 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 674
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 2 cut(s) 413, 532
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 7 cut(s) 112, 115, 214, 369, 403, 625, 640
Mox20I TGGCCA 1 cut(s) 674
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 674
MseI TTAA 2 cut(s) 294, 321
Msp20I TGGCCA 1 cut(s) 674
MunI CAATTG 3 cut(s) 19, 44, 411
MwoI GCNNNNNNNGC 3 cut(s) 491, 521, 551
NcoI CCATGG 2 cut(s) 555, 675
NdeII GATC 2 cut(s) 264, 343
NlaIII CATG 7 cut(s) 60, 131, 274, 460, 559, 679, 694
NlaIV GGNNCC 2 cut(s) 16, 229
NspV TTCGAA 1 cut(s) 437
PagI TCATGA 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 4 cut(s) 8, 53, 250, 563
PflMI CCANNNNNTGG 2 cut(s) 86, 114
PkrI GCNGC 2 cut(s) 227, 526
PleI GAGTC 2 cut(s) 412, 532
PpsI GAGTC 2 cut(s) 412, 532
Ppu21I YACGTR 1 cut(s) 65
Psp1406I AACGTT 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 16, 229
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 264
RsaI GTAC 2 cut(s) 16, 326
RsaNI GTAC 2 cut(s) 15, 325
SaqAI TTAA 2 cut(s) 294, 321
SatI GCNGC 2 cut(s) 226, 525
Sau3AI GATC 2 cut(s) 264, 343
SchI GAGTC 2 cut(s) 413, 532
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 3 cut(s) 380, 511, 649
SfuI TTCGAA 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 258
SmoI CTYRAG 1 cut(s) 258
SsiI CCGC 2 cut(s) 225, 771
SspMI CTAG 1 cut(s) 587
StyI CCWWGG 2 cut(s) 555, 675
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 3 cut(s) 67, 163, 246
TaqI TCGA 3 cut(s) 380, 437, 792
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 4 cut(s) 8, 53, 250, 563
Tru1I TTAA 2 cut(s) 294, 321
Tru9I TTAA 2 cut(s) 294, 321
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 5 cut(s) 45, 116, 259, 263, 287
TspRI CASTG 1 cut(s) 91
Van91I CCANNNNNTGG 2 cut(s) 86, 114
XapI RAATTY 5 cut(s) 39, 171, 290, 299, 638
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.