pycom04g10470

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
13202291 .. 13203135
845 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10470.2

Sequence Viewer

Length: 657 bp
ATGTGGAGTAAAATTACGAAATCGTTTTGCGATGTACATGGAAAAGATGTCAGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGCCATCTCTCATGCTTCTGGTAATCTGCGTAGTGGGACAAGTTTAGCGGATCAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCGTAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAAATGTGGCATCCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACATAGTTCGCCAGAAGCAGACATAGCCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAAGAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTCAGGCTTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTGCTTGCCAAGGTGAATTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTACTGCTATGGCAGCAATAATAGTAGCTATTGAGGCTCGTGATGCGGCAACTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTAGATAA

Protein Analysis

219

Amino Acids

24.59

Weight (kDa)

8.53

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 313
AciI CCGC 2 cut(s) 164, 602
AclWI GGATC 1 cut(s) 174
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 1 cut(s) 36
AgsI TTSAA 5 cut(s) 71, 223, 365, 431, 520
AluBI AGCT 2 cut(s) 557, 584
AluI AGCT 2 cut(s) 557, 584
Alw26I GTCTC 2 cut(s) 392, 607
AlwI GGATC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 569
AspS9I GGNCC 1 cut(s) 284
AsuHPI GGTGA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 284
AxyI CCTNAGG 1 cut(s) 422
BauI CACGAG 1 cut(s) 594
BbsI GAAGAC 2 cut(s) 59, 372
BbvI GCAGC 1 cut(s) 581
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 392, 607
BfaI CTAG 3 cut(s) 57, 261, 540
BglII AGATCT 1 cut(s) 53
BisI GCNGC 2 cut(s) 570, 603
BlsI GCNGC 2 cut(s) 571, 604
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BmsI GCATC 4 cut(s) 104, 287, 452, 589
BpiI GAAGAC 2 cut(s) 59, 372
BsaHI GRCGYC 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 508
BsaWI WCCGGW 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 2 cut(s) 95, 278
BseMII CTCAG 2 cut(s) 436, 600
BseXI GCAGC 1 cut(s) 581
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 3 cut(s) 166, 391, 403
BsmAI GTCTC 2 cut(s) 392, 607
BsmFI GGGAC 3 cut(s) 166, 391, 403
BsmI GAATGC 1 cut(s) 188
Bso31I GGTCTC 1 cut(s) 392
Bsp1407I TGTACA 1 cut(s) 34
Bsp143I GATC 2 cut(s) 53, 166
BspACI CCGC 2 cut(s) 164, 602
BspCNI CTCAG 2 cut(s) 435, 601
BspPI GGATC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 2 cut(s) 53, 166
BssNI GRCGYC 1 cut(s) 380
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 594
Bst4CI ACNGT 2 cut(s) 209, 305
BstACI GRCGYC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 422, 609
BstF5I GGATG 2 cut(s) 95, 278
BstKTI GATC 2 cut(s) 56, 169
BstMAI GTCTC 2 cut(s) 392, 607
BstMBI GATC 2 cut(s) 53, 166
BstMWI GCNNNNNNNGC 4 cut(s) 338, 569, 590, 599
BstV1I GCAGC 1 cut(s) 581
BstV2I GAAGAC 2 cut(s) 59, 372
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 2 cut(s) 95, 278
Cac8I GCNNGC 1 cut(s) 505
Cfr13I GGNCC 1 cut(s) 284
CseI GACGC 1 cut(s) 388
Csp6I GTAC 1 cut(s) 35
CviAII CATG 5 cut(s) 38, 128, 298, 523, 528
CviJI RGCY 7 cut(s) 341, 353, 427, 539, 557, 584, 593
CviKI_1 RGCY 7 cut(s) 341, 353, 427, 539, 557, 584, 593
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 2 cut(s) 422, 609
DpnI GATC 2 cut(s) 55, 168
DpnII GATC 2 cut(s) 53, 166
DrdI GACNNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 422
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 5 cut(s) 41, 131, 301, 526, 531
FaqI GGGAC 3 cut(s) 166, 391, 403
FatI CATG 5 cut(s) 37, 127, 297, 522, 527
FblI GTMKAC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 570, 603
FokI GGATG 2 cut(s) 82, 265
Fsp4HI GCNGC 2 cut(s) 570, 603
FspBI CTAG 3 cut(s) 57, 261, 540
GluI GCNGC 2 cut(s) 570, 603
HapII CCGG 1 cut(s) 282
HgaI GACGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 5 cut(s) 41, 131, 301, 526, 531
HinfI GANTC 1 cut(s) 409
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 53, 171
Hpy188III TCNNGA 3 cut(s) 287, 596, 635
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 209, 305
HpyCH4V TGCA 2 cut(s) 200, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 569, 590, 599
HpyF3I CTNAG 2 cut(s) 422, 609
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 5 cut(s) 41, 131, 301, 526, 531
Kzo9I GATC 2 cut(s) 53, 166
LpnPI CCDG 7 cut(s) 120, 295, 300, 339, 396, 408, 409
Lsp1109I GCAGC 1 cut(s) 581
LweI GCATC 4 cut(s) 104, 287, 452, 589
MaeI CTAG 3 cut(s) 57, 261, 540
MaeIII GTNAC 1 cut(s) 209
MalI GATC 2 cut(s) 55, 168
MboI GATC 2 cut(s) 53, 166
MboII GAAGA 4 cut(s) 59, 377, 398, 456
MflI RGATCY 1 cut(s) 53
MluCI AATT 3 cut(s) 12, 243, 515
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 59, 89
MnlI CCTC 4 cut(s) 431, 487, 541, 583
MseI TTAA 1 cut(s) 630
MspI CCGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 338, 569, 590, 599
NdeII GATC 2 cut(s) 53, 166
NlaIII CATG 5 cut(s) 41, 131, 301, 526, 531
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 571, 604
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 2 cut(s) 570, 603
Sau3AI GATC 2 cut(s) 53, 166
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 403
SetI ASST 7 cut(s) 67, 76, 436, 460, 514, 559, 586
SfaNI GCATC 4 cut(s) 104, 287, 452, 589
SinI GGWCC 1 cut(s) 284
Sse9I AATT 3 cut(s) 12, 243, 515
SsiI CCGC 2 cut(s) 164, 602
SspMI CTAG 3 cut(s) 57, 261, 540
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 209, 305
TaqI TCGA 1 cut(s) 634
TasI AATT 3 cut(s) 12, 243, 515
TatI WGTACW 1 cut(s) 34
TauI GCSGC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TseI GCWGC 1 cut(s) 569
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 313
XspI CTAG 3 cut(s) 57, 261, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.