pycom11g14470

gpi-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000206
Physical Location & Seq
Forward (+)
14408930 .. 14410077
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14470.2

Sequence Viewer

Length: 873 bp
ATGTACATGGAAAAGATGCCAGATCTAGTCAAGATCTTCAAGGTCGTTGGAAAAAAACTCAACGCATCCTTTAATTGTTGGAAAAACGCCATCTCTCATGCTTCTGGTAATCTGCGTAGTGGGACAAGTTTAGCGGATGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCATGACAAATCATTCAACAAATGGGAGTGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCGCCAGAAGCAGACACAGGCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGCTAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTACTCGTCAAGGTGAACTGAACATGGCATGGGAAAAGGAACGAGATGAGGAAAAAGCTACTGCTATGGCAGCAATAATAGCAGCTACTGAGGCTCGTGATGCGGCGGCTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGCTCAAACAGATCGTGACACTATGAACAAGTCTCTAGTAGGACTGTCTCCGAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAAGAAGGCGTGCAAGAGATGCCGAAACAAGTCAAGGGGGTTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCACCACATATCCTAACTCCACAGACTTCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.08

Weight (kDa)

6.99

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 283
AciI CCGC 3 cut(s) 134, 572, 575
AclWI GGATC 1 cut(s) 827
AcsI RAATTY 1 cut(s) 721
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 4 cut(s) 40, 193, 335, 726
AluBI AGCT 3 cut(s) 527, 554, 810
AluI AGCT 3 cut(s) 527, 554, 810
Alw26I GTCTC 5 cut(s) 134, 362, 577, 705, 720
AlwI GGATC 1 cut(s) 827
AlwNI CAGNNNCTG 1 cut(s) 557
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 539, 551
ApoI RAATTY 1 cut(s) 721
AsiGI ACCGGT 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 494
AvaII GGWCC 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 392
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 551, 563
BccI CCATC 2 cut(s) 98, 661
BcoDI GTCTC 5 cut(s) 134, 362, 577, 705, 720
BfaI CTAG 6 cut(s) 26, 231, 365, 704, 822, 837
BfmI CTRYAG 1 cut(s) 811
BglII AGATCT 2 cut(s) 22, 33
BisI GCNGC 4 cut(s) 540, 552, 573, 576
BlsI GCNGC 4 cut(s) 541, 553, 574, 577
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 805
BmsI GCATC 6 cut(s) 6, 74, 422, 559, 639, 772
BpiI GAAGAC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 251
Bse118I RCCGGY 1 cut(s) 251
Bse21I CCTNAGG 1 cut(s) 392
BseGI GGATG 3 cut(s) 65, 142, 672
BseMII CTCAG 3 cut(s) 406, 549, 570
BseXI GCAGC 2 cut(s) 551, 563
BshFI GGCC 1 cut(s) 397
BshTI ACCGGT 1 cut(s) 251
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 3 cut(s) 136, 361, 373
BsmAI GTCTC 5 cut(s) 134, 362, 577, 705, 720
BsmFI GGGAC 3 cut(s) 136, 361, 373
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 22, 33, 679, 832
BspACI CCGC 3 cut(s) 134, 572, 575
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 3 cut(s) 405, 550, 571
BspLI GGNNCC 1 cut(s) 805
BspPI GGATC 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 251
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 251
BssMI GATC 4 cut(s) 22, 33, 679, 832
BssNI GRCGYC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 564
Bst4CI ACNGT 3 cut(s) 275, 290, 714
BstACI GRCGYC 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 782
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 4 cut(s) 392, 558, 579, 653
BstF5I GGATG 3 cut(s) 65, 142, 672
BstKTI GATC 4 cut(s) 25, 36, 682, 835
BstMAI GTCTC 5 cut(s) 134, 362, 577, 705, 720
BstMBI GATC 4 cut(s) 22, 33, 679, 832
BstMWI GCNNNNNNNGC 6 cut(s) 539, 548, 560, 569, 769, 782
BstSFI CTRYAG 1 cut(s) 811
BstV1I GCAGC 2 cut(s) 551, 563
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 3 cut(s) 22, 33, 832
BstYI RGATCY 3 cut(s) 22, 33, 832
Bsu36I CCTNAGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 3 cut(s) 65, 142, 672
Cac8I GCNNGC 1 cut(s) 774
CaiI CAGNNNCTG 1 cut(s) 557
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 6 cut(s) 7, 98, 179, 268, 493, 498
CviJI RGCY 8 cut(s) 323, 397, 527, 554, 563, 578, 671, 810
CviKI_1 RGCY 8 cut(s) 323, 397, 527, 554, 563, 578, 671, 810
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 4 cut(s) 392, 558, 579, 653
DpnI GATC 4 cut(s) 24, 35, 681, 834
DpnII GATC 4 cut(s) 22, 33, 679, 832
DrdI GACNNNNNNGTC 1 cut(s) 385
DseDI GACNNNNNNGTC 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 254
Eco81I CCTNAGG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 721
FaeI CATG 6 cut(s) 10, 101, 182, 271, 496, 501
FaqI GGGAC 3 cut(s) 136, 361, 373
FatI CATG 6 cut(s) 6, 97, 178, 267, 492, 497
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 4 cut(s) 540, 552, 573, 576
FokI GGATG 3 cut(s) 52, 149, 679
Fsp4HI GCNGC 4 cut(s) 540, 552, 573, 576
FspBI CTAG 6 cut(s) 26, 231, 365, 704, 822, 837
GluI GCNGC 4 cut(s) 540, 552, 573, 576
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 6 cut(s) 10, 101, 182, 271, 496, 501
HinfI GANTC 1 cut(s) 379
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 284, 485
Hpy188I TCNGA 2 cut(s) 720, 745
Hpy188III TCNNGA 6 cut(s) 31, 257, 566, 605, 638, 683
Hpy8I GTNNAC 2 cut(s) 284, 485
HpyAV CCTTC 2 cut(s) 338, 762
HpyCH4III ACNGT 3 cut(s) 275, 290, 714
HpyCH4V TGCA 3 cut(s) 170, 271, 776
HpyF10VI GCNNNNNNNGC 6 cut(s) 539, 548, 560, 569, 769, 782
HpyF3I CTNAG 4 cut(s) 392, 558, 579, 653
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 6 cut(s) 10, 101, 182, 271, 496, 501
Kzo9I GATC 4 cut(s) 22, 33, 679, 832
LpnPI CCDG 9 cut(s) 33, 90, 265, 270, 294, 309, 366, 379, 820
Lsp1109I GCAGC 2 cut(s) 551, 563
LweI GCATC 6 cut(s) 6, 74, 422, 559, 639, 772
MaeI CTAG 6 cut(s) 26, 231, 365, 704, 822, 837
MaeIII GTNAC 1 cut(s) 683
MalI GATC 4 cut(s) 24, 35, 681, 834
MboI GATC 4 cut(s) 22, 33, 679, 832
MboII GAAGA 5 cut(s) 28, 347, 426, 671, 777
MflI RGATCY 3 cut(s) 22, 33, 832
MluCI AATT 4 cut(s) 73, 213, 240, 721
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 2 cut(s) 28, 59
MnlI CCTC 5 cut(s) 401, 408, 457, 511, 553
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 2 cut(s) 72, 600
MspI CCGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 158
MwoI GCNNNNNNNGC 6 cut(s) 539, 548, 560, 569, 769, 782
NdeII GATC 4 cut(s) 22, 33, 679, 832
NlaIII CATG 6 cut(s) 10, 101, 182, 271, 496, 501
NlaIV GGNNCC 1 cut(s) 805
NmuCI GTSAC 1 cut(s) 683
PceI AGGCCT 1 cut(s) 397
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 4 cut(s) 541, 553, 574, 577
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 805
PspPI GGNCC 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 557
PsuI RGATCY 3 cut(s) 22, 33, 832
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 72, 600
SatI GCNGC 4 cut(s) 540, 552, 573, 576
Sau3AI GATC 4 cut(s) 22, 33, 679, 832
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 373
SetI ASST 7 cut(s) 45, 406, 430, 484, 529, 556, 812
SfaNI GCATC 6 cut(s) 6, 74, 422, 559, 639, 772
SfcI CTRYAG 1 cut(s) 811
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 4 cut(s) 73, 213, 240, 721
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 3 cut(s) 134, 572, 575
SspI AATATT 1 cut(s) 731
SspMI CTAG 6 cut(s) 26, 231, 365, 704, 822, 837
StuI AGGCCT 1 cut(s) 397
TaaI ACNGT 3 cut(s) 275, 290, 714
TaqI TCGA 2 cut(s) 604, 637
TasI AATT 4 cut(s) 73, 213, 240, 721
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 575, 578
Tru1I TTAA 2 cut(s) 72, 600
Tru9I TTAA 2 cut(s) 72, 600
TseFI GTSAC 1 cut(s) 683
TseI GCWGC 2 cut(s) 539, 551
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 2 cut(s) 623, 707
TspGWI ACGGA 1 cut(s) 356
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 6 cut(s) 26, 231, 365, 704, 822, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.