Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

22904004 .. 22907554

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAACCGGGCACCTCGTGGTCGACTATGGAGGATGTTTTGTTGTGCGAGTGTTGGGTTCGTGTTGCTCATGACCCGCTTACGGGTAGCGAATTGAAGCTTAATCAAATGTGGAAACAAATCCGTGCAGAGTTTTCCGAGAGGAGCAATTCGACTCGCACGGAGCAAAGTATTTCTAGCAGGTGGAAAACTCTAAACAAAAAGTTACGCAGCTGGAGAAACGCCTTGGAAAAAGCTCAAGATGATTTTCAAAGTGGCAAAAATCTTACTCATCAGGCACTACAAGCACTCTTGTTGTATAGTGCAGACAACAAGAATAAGTCATTCAAACATCACAATTGCTGGGCCGTTGTGAAGGGATGTCCGAGATTTAAAATTGTTTCCAATAGTCCAACCGTTGTCAAAAACGAGGTGCCACGGCACGATTCACCTAATGGAGATTTGCCGTTGGAGTCCCCAGTTGAAAAGGAGTCACCAACTGAAAAAAGGTCGATTCCTGTGGGTAAGAAGGTTGCGAAGAAAAGAGGTAAAAAGGGGGGTTCCTTCAATGAATGTGCAAAGTTCTTAAAAGAACTTGTTCGCCAAGGTGAAATTAATATCAAGCGGGAGAGGTTAAGAGATGAGGCACTTGCGACAGAAAGGGAGTATGCACGAAAACAAGATGAGGTACTCCTGAGAGAAAGGATGGACAAGCGAGATCGGGAAATTATGTCCCAGAATCTAAACAATATGTCCTCTGATTCAAAACTGTTTTGGGAACAAGAAAAAGCGGATGTTATGAAAAGAAGGTGTGCAAGGGAAGATGGACCTAGCAACACAGAGTTATTCCAAGAGAGTTTATCAGGCAGTGCAGATGTCTACAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

290

Amino Acids

33.4

Weight (kDa)

9.35

Isoelectric Point (pI)

62.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	6 - 84	8.3e-06	Myb/SANT-like DNA-binding domain
NAM-associated	PF14303	107 - 257	2.3e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	171
Acc36I	ACCTGC	1 cut(s)	171
AccB1I	GGYRCC	2 cut(s)	11, 412
AccI	GTMKAC	2 cut(s)	23, 858
AciI	CCGC	3 cut(s)	77, 604, 770
AdeI	CACNNNGTG	1 cut(s)	18
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	2 cut(s)	82, 83
AgsI	TTSAA	6 cut(s)	97, 251, 328, 464, 547, 744
AluBI	AGCT	3 cut(s)	100, 213, 236
AluI	AGCT	3 cut(s)	100, 213, 236
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	210
AseI	ATTAAT	1 cut(s)	594
Asp700I	GAANNNNTTC	1 cut(s)	576
AspS9I	GGNCC	2 cut(s)	345, 806
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	3 cut(s)	420, 465, 599
AvaII	GGWCC	1 cut(s)	806
BaeGI	GKGCMC	1 cut(s)	14
BanI	GGYRCC	2 cut(s)	11, 412
BauI	CACGAG	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	679, 797
BceAI	ACGGC	3 cut(s)	332, 430, 434
BcnI	CCSGG	1 cut(s)	9
BfaI	CTAG	2 cut(s)	177, 810
BfmI	CTRYAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	806
BmgT120I	GGNCC	2 cut(s)	345, 806
BmiI	GGNNCC	4 cut(s)	6, 13, 414, 541
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	452
BmuI	ACTGGG	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	225, 416, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 83
Bse1I	ACTGG	1 cut(s)	458
BseDI	CCNNGG	3 cut(s)	225, 416, 583
BseGI	GGATG	4 cut(s)	40, 365, 690, 778
BseLI	CCNNNNNNNGG	2 cut(s)	82, 83
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	342
BsgI	GTGCAG	3 cut(s)	147, 324, 870
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	2 cut(s)	11, 412
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	439, 697
BslI	CCNNNNNNNGG	2 cut(s)	82, 83
BsmFI	GGGAC	2 cut(s)	439, 697
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	697
BspACI	CCGC	3 cut(s)	77, 604, 770
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	6, 13, 414, 541
BspMI	ACCTGC	1 cut(s)	171
BspT107I	GGYRCC	2 cut(s)	11, 412
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	225, 416, 583
BssMI	GATC	1 cut(s)	697
BssSI	CACGAG	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	225, 583
Bst2BI	CACGAG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	397, 750
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	416
BstF5I	GGATG	4 cut(s)	40, 365, 690, 778
BstKTI	GATC	1 cut(s)	700
BstMBI	GATC	1 cut(s)	697
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	416
BtsCI	GGATG	4 cut(s)	40, 365, 690, 778
BtsI	GCAGTG	1 cut(s)	853
BtsIMutI	CAGTG	1 cut(s)	853
BveI	ACCTGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	345, 806
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	2 cut(s)	71, 867
CviJI	RGCY	4 cut(s)	100, 213, 236, 347
CviKI_1	RGCY	4 cut(s)	100, 213, 236, 347
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	1 cut(s)	699
DpnII	GATC	1 cut(s)	697
DraI	TTTAAA	1 cut(s)	373
DraIII	CACNNNGTG	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	225, 583
Eco47I	GGWCC	1 cut(s)	806
EcoT14I	CCWWGG	2 cut(s)	225, 583
ErhI	CCWWGG	2 cut(s)	225, 583
FaeI	CATG	2 cut(s)	74, 870
FaiI	YATR	8 cut(s)	29, 72, 300, 648, 710, 731, 779, 868
FaqI	GGGAC	2 cut(s)	439, 697
FatI	CATG	2 cut(s)	70, 866
FauI	CCCGC	2 cut(s)	84, 597
FblI	GTMKAC	2 cut(s)	23, 858
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	4 cut(s)	47, 372, 697, 785
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	2 cut(s)	177, 810
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	74, 870
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	7 cut(s)	154, 425, 452, 470, 493, 718, 740
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	420, 465, 599
Hpy166II	GTNNAC	2 cut(s)	24, 859
Hpy188I	TCNGA	3 cut(s)	139, 366, 739
Hpy188III	TCNNGA	4 cut(s)	71, 239, 673, 701
Hpy8I	GTNNAC	2 cut(s)	24, 859
HpyAV	CCTTC	4 cut(s)	349, 502, 553, 780
HpyCH4III	ACNGT	2 cut(s)	397, 750
HpyCH4V	TGCA	6 cut(s)	128, 305, 557, 650, 794, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	1 cut(s)	674
Hsp92II	CATG	2 cut(s)	74, 870
Kzo9I	GATC	1 cut(s)	697
LmnI	GCTCC	2 cut(s)	144, 163
Lsp1109I	GCAGC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	177, 810
MaeIII	GTNAC	2 cut(s)	204, 471
MalI	GATC	1 cut(s)	699
MboI	GATC	1 cut(s)	697
MboII	GAAGA	2 cut(s)	529, 812
MfeI	CAATTG	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	6 cut(s)	92, 148, 337, 375, 591, 705
MlyI	GAGTC	3 cut(s)	148, 461, 479
MmeI	TCCRAC	2 cut(s)	416, 429
MnlI	CCTC	9 cut(s)	25, 25, 135, 403, 518, 603, 616, 658, 745
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	5 cut(s)	102, 372, 566, 594, 614
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
MunI	CAATTG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	697
NlaIII	CATG	2 cut(s)	74, 870
NlaIV	GGNNCC	4 cut(s)	6, 13, 414, 541
NmuCI	GTSAC	1 cut(s)	471
PagI	TCATGA	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	4 cut(s)	425, 493, 718, 740
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	3 cut(s)	148, 460, 478
PpsI	GAGTC	3 cut(s)	148, 460, 478
PshBI	ATTAAT	1 cut(s)	594
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	4 cut(s)	6, 13, 414, 541
PspPI	GGNCC	2 cut(s)	345, 806
PvuII	CAGCTG	1 cut(s)	213
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	5 cut(s)	102, 372, 566, 594, 614
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	697
Sau96I	GGNCC	2 cut(s)	345, 806
SchI	GAGTC	3 cut(s)	148, 461, 479
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	859
SinI	GGWCC	1 cut(s)	806
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	6 cut(s)	92, 148, 337, 375, 591, 705
SsiI	CCGC	3 cut(s)	77, 604, 770
SspMI	CTAG	2 cut(s)	177, 810
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	225, 583
TaaI	ACNGT	2 cut(s)	397, 750
TaqI	TCGA	3 cut(s)	23, 152, 491
TasI	AATT	6 cut(s)	92, 148, 337, 375, 591, 705
TfiI	GAWTC	4 cut(s)	425, 493, 718, 740
Tru1I	TTAA	5 cut(s)	102, 372, 566, 594, 614
Tru9I	TTAA	5 cut(s)	102, 372, 566, 594, 614
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	2 cut(s)	564, 794
TspGWI	ACGGA	2 cut(s)	113, 176
TspRI	CASTG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	806
VspI	ATTAAT	1 cut(s)	594
XmiI	GTMKAC	2 cut(s)	23, 858
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	2 cut(s)	177, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.