MD11G1261300.v1.1

gpi-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000206
Physical Location & Seq
Forward (+)
37609934 .. 37613177
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1261300.v1.1.491

Sequence Viewer

Length: 606 bp
ATGCACGGTATGGATCTACATAGTTCTCCAGAATTAGATATGGCCGAACAAGAAGCCGACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGTCCGAGACCCAACCGACTCGTCAGTCCCTCAAGCCTCAAGGTAAAAAAGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTACTCGCCAAGGTGAACTGAACATGGCACGGGAAAAGGCTAGAGATGAGGAAAAAGTTGCTGCTATGACAGCAATAATAGCAGCTACTAGGGCCCGTGATGTGGCGACTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGCTGGTTAGAGAAGCACTTCATCGAGAAAATGAAATGCTTAGAGAAGAAAGGATGGCTCAAGCAGATCGTGACACTATGAGCAAGTCTCTAATAGGACTGTCTCCGAATTCTAAATATTTTTGGACATCGGAAAAAAAAGATGTCATGCGAAGGAGGCGTGCAAGAGATGTGGAAACAAGTCAAGGGGGTTCTAGCTACACAAATCATGGCATCCAAGATCCTAGCACCACATATCCTAACTCGAGAGACTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.04

Weight (kDa)

5.93

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AclWI GGATC 2 cut(s) 21, 560
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 3 cut(s) 287, 349, 543
AluI AGCT 3 cut(s) 287, 349, 543
Alw26I GTCTC 5 cut(s) 95, 310, 438, 453, 588
AlwI GGATC 2 cut(s) 21, 560
Ama87I CYCGRG 1 cut(s) 589
AoxI GGCC 2 cut(s) 42, 294
ApaI GGGCCC 1 cut(s) 298
ApeKI GCWGC 2 cut(s) 263, 284
ApoI RAATTY 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 294, 295
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 589
BaeGI GKGCMC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 298
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 2 cut(s) 250, 296
BccI CCATC 1 cut(s) 394
BcoDI GTCTC 5 cut(s) 95, 310, 438, 453, 588
BfaI CTAG 4 cut(s) 243, 291, 540, 570
BisI GCNGC 2 cut(s) 264, 285
BlsI GCNGC 2 cut(s) 265, 286
BmeT110I CYCGRG 1 cut(s) 589
BmgT120I GGNCC 2 cut(s) 294, 295
BmiI GGNNCC 1 cut(s) 296
BmsI GCATC 2 cut(s) 155, 567
BpiI GAAGAC 1 cut(s) 75
BplI GAGNNNNNCTC 2 cut(s) 418, 450
BpmI CTGGAG 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 110, 117, 390
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 405, 558
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 298
BseXI GCAGC 2 cut(s) 250, 296
BshFI GGCC 2 cut(s) 44, 296
BsiHKCI CYCGRG 1 cut(s) 589
BslFI GGGAC 2 cut(s) 94, 106
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 5 cut(s) 95, 310, 438, 453, 588
BsmFI GGGAC 2 cut(s) 94, 106
BsnI GGCC 2 cut(s) 44, 296
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 589
Bsp120I GGGCCC 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 3 cut(s) 13, 412, 565
BspANI GGCC 2 cut(s) 44, 296
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 296
BspPI GGATC 2 cut(s) 21, 560
BspTNI GGTCTC 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 3 cut(s) 13, 412, 565
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 8, 447
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 507
BstDEI CTNAG 2 cut(s) 312, 386
BstF5I GGATG 2 cut(s) 405, 558
BstKTI GATC 3 cut(s) 16, 415, 568
BstMAI GTCTC 5 cut(s) 95, 310, 438, 453, 588
BstMBI GATC 3 cut(s) 13, 412, 565
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 293, 502
BstSLI GKGCMC 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 250, 296
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 13, 565
BstYI RGATCY 2 cut(s) 13, 565
BsuRI GGCC 2 cut(s) 44, 296
BtsCI GGATG 2 cut(s) 405, 558
Cac8I GCNNGC 1 cut(s) 507
Cfr13I GGNCC 2 cut(s) 294, 295
CseI GACGC 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 498, 533
CviAII CATG 3 cut(s) 226, 493, 554
CviJI RGCY 9 cut(s) 44, 56, 130, 242, 287, 296, 349, 404, 543
CviKI_1 RGCY 9 cut(s) 44, 56, 130, 242, 287, 296, 349, 404, 543
DdeI CTNAG 2 cut(s) 312, 386
DpnI GATC 3 cut(s) 15, 414, 567
DpnII GATC 3 cut(s) 13, 412, 565
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 294
EcoRI GAATTC 1 cut(s) 454
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 3 cut(s) 229, 496, 557
FaqI GGGAC 2 cut(s) 94, 106
FatI CATG 3 cut(s) 225, 492, 553
Fnu4HI GCNGC 2 cut(s) 264, 285
FokI GGATG 2 cut(s) 412, 545
FriOI GRGCYC 1 cut(s) 298
Fsp4HI GCNGC 2 cut(s) 264, 285
FspBI CTAG 4 cut(s) 243, 291, 540, 570
GluI GCNGC 2 cut(s) 264, 285
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 2 cut(s) 44, 296
HgaI GACGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 3 cut(s) 229, 496, 557
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 100, 453, 478
Hpy188III TCNNGA 5 cut(s) 29, 338, 371, 416, 591
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 71, 492
HpyCH4III ACNGT 2 cut(s) 8, 447
HpyCH4V TGCA 2 cut(s) 4, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 293, 502
HpyF3I CTNAG 2 cut(s) 312, 386
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 3 cut(s) 229, 496, 557
Kzo9I GATC 3 cut(s) 13, 412, 565
LpnPI CCDG 3 cut(s) 42, 99, 335
Lsp1109I GCAGC 2 cut(s) 250, 296
LweI GCATC 2 cut(s) 155, 567
MaeI CTAG 4 cut(s) 243, 291, 540, 570
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 15, 414, 567
MboI GATC 3 cut(s) 13, 412, 565
MboII GAAGA 3 cut(s) 80, 159, 404
MflI RGATCY 2 cut(s) 13, 565
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 2 cut(s) 32, 454
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 5 cut(s) 134, 141, 190, 244, 495
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 293, 502
NdeII GATC 3 cut(s) 13, 412, 565
NlaIII CATG 3 cut(s) 229, 496, 557
NlaIV GGNNCC 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 265, 286
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 296
PspOMI GGGCCC 1 cut(s) 294
PspPI GGNCC 2 cut(s) 294, 295
PsuI RGATCY 2 cut(s) 13, 565
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 264, 285
Sau3AI GATC 3 cut(s) 13, 412, 565
Sau96I GGNCC 2 cut(s) 294, 295
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 298
SetI ASST 6 cut(s) 139, 163, 217, 289, 351, 545
SfaNI GCATC 2 cut(s) 155, 567
Sfr274I CTCGAG 1 cut(s) 589
SlaI CTCGAG 1 cut(s) 589
SmlI CTYRAG 4 cut(s) 125, 132, 405, 589
SmoI CTYRAG 4 cut(s) 125, 132, 405, 589
Sse9I AATT 2 cut(s) 32, 454
SspI AATATT 1 cut(s) 464
SspMI CTAG 4 cut(s) 243, 291, 540, 570
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 2 cut(s) 8, 447
TaqI TCGA 3 cut(s) 337, 370, 590
TasI AATT 2 cut(s) 32, 454
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 263, 284
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 356, 393
TspGWI ACGGA 1 cut(s) 89
XapI RAATTY 1 cut(s) 454
XhoI CTCGAG 1 cut(s) 589
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 4 cut(s) 243, 291, 540, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.