Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

8055681 .. 8056997

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1096700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTGGAGTTTAATTCATAGCAAAGTTCTTGAGCAAATGAGTGGGAAAAGAACCAAAGAATCGATGTCCAATCGTTGGAAAATACTTAGCCATTCCTTTAGTACGTGGAGACATGCCTTGACACAAGCTAGTAGTAATGTTCGAAGTGGGGCAAATTATACGGATAAGCAACTTCAAGCACAAGCATGGTATGGTGCCAAAATCAAATCAAGAAACAAATCATTCACCCGGTGGGAATGTTGGAATATTGTTAAAGATTGTCCTAAATTCAAAGTTGTACTTGTTGGTCCAGAAGTATGCATGAACAACATCCCTCTACACAACACCTTTGTACACAACACCCTTCCACACTCTACACACAATCATGGCTCCCATGTTGATGAAGAAGATGGAGAAGAAGTGCCTGAAACGCCCATTCCTGAACAAGCGTCGGGGTCGACCCGTTATCCAATTAGGCCTCTAGGTAAGAAGGCTTCAAAGAGGAAAGGGAGTGCTTCCAAAAATGATTATGGAAAGTACATGCAAGAACTTGCTCATCAAGGTGAATTGACGTTGGCGCGGGAATTGGCGAAATATGAGGCTGACAAGGCTAGAGATGAGGTAAAAGCTGCAGCTATTCAACAAGCATTTCAAGCTGAACAGAGAGAAAAAGAGCTACTTAGGCAAGAAATGGAGTTTCTTAGAGAAGAAAGAATTGCACAACGAGATCGTGACATTATGAACACGCGTTTAGAAGGGATGTCTCCAAATTCTAAATATTTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

256

Amino Acids

29.49

Weight (kDa)

9.31

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	73 - 254	1.3e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	75
AccI	GTMKAC	1 cut(s)	437
AccII	CGCG	2 cut(s)	559, 727
AciI	CCGC	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	266, 748
AdeI	CACNNNGTG	1 cut(s)	231
AfaI	GTAC	4 cut(s)	103, 279, 333, 518
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	176, 271, 477, 620, 632
AluBI	AGCT	5 cut(s)	128, 608, 614, 635, 655
AluI	AGCT	5 cut(s)	128, 608, 614, 635, 655
Alw26I	GTCTC	2 cut(s)	103, 747
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	608, 611
ApoI	RAATTY	2 cut(s)	266, 748
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	217, 554
AsuII	TTCGAA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
BbvI	GCAGC	2 cut(s)	595, 623
BccI	CCATC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	103, 747
BfaI	CTAG	3 cut(s)	129, 461, 591
BfmI	CTRYAG	1 cut(s)	609
BisI	GCNGC	2 cut(s)	609, 612
BlsI	GCNGC	2 cut(s)	610, 613
Bme1390I	CCNGG	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	196, 370
BmrFI	CCNGG	1 cut(s)	229
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	229
Bsa29I	ATCGAT	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
BseCI	ATCGAT	1 cut(s)	62
BseGI	GGATG	2 cut(s)	309, 744
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	595, 623
Bsh1236I	CGCG	2 cut(s)	559, 727
BshFI	GGCC	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	194
BshVI	ATCGAT	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	103, 747
BsnI	GGCC	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	706
BspACI	CCGC	1 cut(s)	559
BspANI	GGCC	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	62
BspFNI	CGCG	2 cut(s)	559, 727
BspLI	GGNNCC	2 cut(s)	196, 370
BspMAI	CTGCAG	1 cut(s)	613
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	331
BssMI	GATC	1 cut(s)	706
BstAUI	TGTACA	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	86, 659, 680
BstF5I	GGATG	2 cut(s)	309, 744
BstFNI	CGCG	2 cut(s)	559, 727
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	1 cut(s)	709
BstMAI	GTCTC	2 cut(s)	103, 747
BstMBI	GATC	1 cut(s)	706
BstMWI	GCNNNNNNNGC	4 cut(s)	409, 587, 632, 661
BstNSI	RCATGY	2 cut(s)	116, 523
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	2 cut(s)	559, 727
BstV1I	GCAGC	2 cut(s)	595, 623
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	309, 744
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	1 cut(s)	287
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	4 cut(s)	102, 278, 332, 517
CviAII	CATG	6 cut(s)	113, 186, 301, 365, 374, 520
CviQI	GTAC	4 cut(s)	102, 278, 332, 517
DdeI	CTNAG	3 cut(s)	86, 659, 680
DpnI	GATC	1 cut(s)	708
DpnII	GATC	1 cut(s)	706
DraIII	CACNNNGTG	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	457
Eco47I	GGWCC	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	302
FaeI	CATG	6 cut(s)	116, 189, 304, 368, 377, 523
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 642, 674
FatI	CATG	6 cut(s)	112, 185, 300, 364, 373, 519
FauI	CCCGC	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	2 cut(s)	609, 612
FokI	GGATG	2 cut(s)	296, 751
Fsp4HI	GCNGC	2 cut(s)	609, 612
FspBI	CTAG	3 cut(s)	129, 461, 591
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	2 cut(s)	609, 612
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	229
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	6 cut(s)	116, 189, 304, 368, 377, 523
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	438
HindII	GTYRAC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	2 cut(s)	217, 554
Hpy166II	GTNNAC	2 cut(s)	334, 438
Hpy188III	TCNNGA	5 cut(s)	29, 210, 290, 419, 710
Hpy8I	GTNNAC	2 cut(s)	334, 438
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	3 cut(s)	353, 463, 728
HpyCH4IV	ACGT	2 cut(s)	104, 551
HpyCH4V	TGCA	4 cut(s)	300, 523, 611, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	409, 587, 632, 661
HpyF3I	CTNAG	3 cut(s)	86, 659, 680
HpySE526I	ACGT	2 cut(s)	104, 551
Hsp92II	CATG	6 cut(s)	116, 189, 304, 368, 377, 523
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	1 cut(s)	706
LmnI	GCTCC	1 cut(s)	374
LpnPI	CCDG	4 cut(s)	242, 303, 417, 432
Lsp1109I	GCAGC	2 cut(s)	595, 623
MaeI	CTAG	3 cut(s)	129, 461, 591
MaeII	ACGT	2 cut(s)	104, 551
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	1 cut(s)	708
MboI	GATC	1 cut(s)	706
MboII	GAAGA	4 cut(s)	395, 398, 407, 698
MluCI	AATT	8 cut(s)	12, 154, 266, 450, 545, 563, 693, 748
MluI	ACGCGT	1 cut(s)	725
MmeI	TCCRAC	2 cut(s)	56, 221
MnlI	CCTC	5 cut(s)	324, 468, 474, 571, 592
Mph1103I	ATGCAT	1 cut(s)	302
MseI	TTAA	2 cut(s)	11, 252
MslI	CAYNNNNRTG	4 cut(s)	184, 363, 378, 540
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	229
MvnI	CGCG	2 cut(s)	559, 727
MwoI	GCNNNNNNNGC	4 cut(s)	409, 587, 632, 661
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	706
NlaIII	CATG	6 cut(s)	116, 189, 304, 368, 377, 523
NlaIV	GGNNCC	2 cut(s)	196, 370
NmuCI	GTSAC	1 cut(s)	710
NsiI	ATGCAT	1 cut(s)	302
NspI	RCATGY	2 cut(s)	116, 523
NspV	TTCGAA	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	610, 613
Ppu21I	YACGTR	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	196, 370
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	613
RsaI	GTAC	4 cut(s)	103, 279, 333, 518
RsaNI	GTAC	4 cut(s)	102, 278, 332, 517
RseI	CAYNNNNRTG	4 cut(s)	184, 363, 378, 540
SalI	GTCGAC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	11, 252
SatI	GCNGC	2 cut(s)	609, 612
Sau3AI	GATC	1 cut(s)	706
Sau96I	GGNCC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	609
SfuI	TTCGAA	1 cut(s)	142
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	4 cut(s)	184, 363, 378, 540
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	8 cut(s)	12, 154, 266, 450, 545, 563, 693, 748
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	559
SspI	AATATT	2 cut(s)	247, 758
SspMI	CTAG	3 cut(s)	129, 461, 591
StuI	AGGCCT	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	2 cut(s)	107, 554
TaqI	TCGA	3 cut(s)	62, 142, 437
TasI	AATT	8 cut(s)	12, 154, 266, 450, 545, 563, 693, 748
TatI	WGTACW	3 cut(s)	277, 331, 516
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	11, 252
Tru9I	TTAA	2 cut(s)	11, 252
TseFI	GTSAC	1 cut(s)	710
TseI	GCWGC	2 cut(s)	608, 611
Tsp45I	GTSAC	1 cut(s)	710
TspDTI	ATGAA	4 cut(s)	5, 317, 396, 734
TspGWI	ACGGA	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	2 cut(s)	266, 748
XceI	RCATGY	2 cut(s)	116, 523
XmiI	GTMKAC	1 cut(s)	437
XspI	CTAG	3 cut(s)	129, 461, 591
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.