Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

23040174 .. 23040927

Gene Structure 754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGCCCACATTTTTATAGACACTACAATGCAAATAACCATAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCGCCAGAAGCAGACACAGCCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTACTCGTCAAGGTGAACTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTGCTGCTATGGCAGCAATTATTGTAGCTACTGAGGCTCGTGATGCGGCAGCTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATTATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

179

Amino Acids

20.55

Weight (kDa)

5.93

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	145
AciI	CCGC	1 cut(s)	434
AcyI	GRCGYC	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	2 cut(s)	55, 197
AluBI	AGCT	3 cut(s)	389, 416, 440
AluI	AGCT	3 cut(s)	389, 416, 440
Alw26I	GTCTC	2 cut(s)	224, 439
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	4 cut(s)	389, 392, 401, 437
AsiGI	ACCGGT	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	116
AxyI	CCTNAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	376, 379, 413, 449
BcoDI	GTCTC	2 cut(s)	224, 439
BfaI	CTAG	2 cut(s)	93, 372
BisI	GCNGC	5 cut(s)	390, 393, 402, 435, 438
BlsI	GCNGC	5 cut(s)	391, 394, 403, 436, 439
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmsI	GCATC	3 cut(s)	284, 421, 501
BpiI	GAAGAC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	113
Bse21I	CCTNAGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	268, 411, 432
BseXI	GCAGC	4 cut(s)	376, 379, 413, 449
BshFI	GGCC	1 cut(s)	259
BshTI	ACCGGT	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	223, 235
BsmAI	GTCTC	2 cut(s)	224, 439
BsmFI	GGGAC	2 cut(s)	223, 235
BsnI	GGCC	1 cut(s)	259
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	3 cut(s)	267, 412, 433
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	426
Bst2BI	CACGAG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	137, 152
BstACI	GRCGYC	1 cut(s)	212
BstDEI	CTNAG	4 cut(s)	254, 420, 441, 515
BstF5I	GGATG	1 cut(s)	534
BstMAI	GTCTC	2 cut(s)	224, 439
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 398, 401, 422, 431
BstV1I	GCAGC	4 cut(s)	376, 379, 413, 449
BstV2I	GAAGAC	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	3 cut(s)	130, 355, 360
CviJI	RGCY	9 cut(s)	6, 173, 185, 259, 371, 389, 416, 425, 440
CviKI_1	RGCY	9 cut(s)	6, 173, 185, 259, 371, 389, 416, 425, 440
DdeI	CTNAG	4 cut(s)	254, 420, 441, 515
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	254
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	3 cut(s)	133, 358, 363
FaiI	YATR	9 cut(s)	18, 42, 131, 140, 321, 323, 356, 361, 398
FalI	AAGNNNNNCTT	1 cut(s)	517
FaqI	GGGAC	2 cut(s)	223, 235
FatI	CATG	3 cut(s)	129, 354, 359
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	5 cut(s)	390, 393, 402, 435, 438
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	390, 393, 402, 435, 438
FspBI	CTAG	2 cut(s)	93, 372
GluI	GCNGC	5 cut(s)	390, 393, 402, 435, 438
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	133, 358, 363
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	146, 347
Hpy188III	TCNNGA	4 cut(s)	119, 428, 467, 500
Hpy8I	GTNNAC	2 cut(s)	146, 347
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	2 cut(s)	137, 152
HpyCH4V	TGCA	2 cut(s)	32, 133
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 398, 401, 422, 431
HpyF3I	CTNAG	4 cut(s)	254, 420, 441, 515
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	133, 358, 363
LpnPI	CCDG	6 cut(s)	127, 132, 171, 228, 240, 241
Lsp1109I	GCAGC	4 cut(s)	376, 379, 413, 449
LweI	GCATC	3 cut(s)	284, 421, 501
MaeI	CTAG	2 cut(s)	93, 372
MboII	GAAGA	3 cut(s)	209, 288, 533
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	75, 102, 405
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	5 cut(s)	263, 270, 319, 373, 415
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	2 cut(s)	462, 535
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	170, 398, 401, 422, 431
NlaIII	CATG	3 cut(s)	133, 358, 363
PceI	AGGCCT	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	492
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	391, 394, 403, 436, 439
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	462, 535
SatI	GCNGC	5 cut(s)	390, 393, 402, 435, 438
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	268, 292, 346, 391, 418, 442
SfaNI	GCATC	3 cut(s)	284, 421, 501
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	3 cut(s)	75, 102, 405
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	434
SspMI	CTAG	2 cut(s)	93, 372
StuI	AGGCCT	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	137, 152
TaqI	TCGA	2 cut(s)	466, 499
TasI	AATT	3 cut(s)	75, 102, 405
TauI	GCSGC	1 cut(s)	437
Tru1I	TTAA	2 cut(s)	462, 535
Tru9I	TTAA	2 cut(s)	462, 535
TseI	GCWGC	4 cut(s)	389, 392, 401, 437
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	93, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.