pycom09g11120

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
9265751 .. 9267477
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11120.2

Sequence Viewer

Length: 1137 bp
ATGTCATTTAAAAAAAATTGTAAAAAATTCAAAAAAATATCTGAAAAATCTGAAAAAAATTGTAAAATTTTTTTTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTACCTTACACAACAATTTCATATTTTCTCAACTACTTTCAATCACATTCCTTTCTTTGTCTCAAAGTTTGAATCCATTTTTTTTCAACAAAATGACCACTGGTGCAGGTACGAATTGGTCGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAGTTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCTTTGGCACAAGCTAGTAATAATATTCGAAGTGGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCAGTCGGTCCAGAAGTGCACATGAACAGCACCCCTCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCCGAAACGCCCCTCCCTGAACGCGCGTCGGGTTCGACCCGTTTTCCAATTAGGCCTGAAGGTAAGAAGGCTTCAAAGAGAAAAGGGAGTGCTTCGAAGAACGATTATGCAAAGTTCATGGAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCGAGGGACCTGGCGAAAGATGAGGCTGATAAGGCTAGAGAGGCATCAAAACAAGCAGCTGTTGAGAGAGAATTTTATGCTAATGAGAGAGAAAGAGAGCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAACAAGATCGTGAGATTATGAACATGTCTTTAGAAGGGAAGTCTCCAAATTCTAAATTTTTTTGGAAGTCAGAGAAAGCGGACGTTGTGCGAAGGAGGCGTGCAAGAGAAGCAATAGCAAGCCAAGGTGGTTCTAGCACCCACCACAAATTGGTTAACTGA

Protein Analysis

379

Amino Acids

43.63

Weight (kDa)

9.43

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB7I CCANNNNNTGG 2 cut(s) 390, 1126
AccII CGCG 2 cut(s) 702, 704
AciI CCGC 1 cut(s) 1055
AclWI GGATC 1 cut(s) 486
AcsI RAATTY 6 cut(s) 26, 66, 581, 902, 1024, 1031
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 4 cut(s) 220, 256, 418, 506
AfiI CCNNNNNNNGG 2 cut(s) 390, 1126
AflIII ACRYGT 2 cut(s) 952, 999
AgeI ACCGGT 1 cut(s) 543
AgsI TTSAA 9 cut(s) 31, 150, 181, 196, 239, 269, 491, 541, 753
AjnI CCWGG 1 cut(s) 840
AluBI AGCT 5 cut(s) 261, 443, 500, 890, 931
AluI AGCT 5 cut(s) 261, 443, 500, 890, 931
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 3 cut(s) 174, 420, 1023
Alw44I GTGCAC 1 cut(s) 611
AlwI GGATC 1 cut(s) 486
AoxI GGCC 1 cut(s) 731
ApaLI GTGCAC 1 cut(s) 611
ApeKI GCWGC 2 cut(s) 509, 887
ApoI RAATTY 6 cut(s) 26, 66, 581, 902, 1024, 1031
AsiGI ACCGGT 1 cut(s) 543
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 2 cut(s) 602, 838
AsuHPI GGTGA 1 cut(s) 830
AsuII TTCGAA 2 cut(s) 457, 773
AvaII GGWCC 2 cut(s) 602, 838
BaeGI GKGCMC 2 cut(s) 615, 681
BanII GRGCYC 1 cut(s) 976
BarI GAAGNNNNNNTAC 2 cut(s) 733, 765
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 496, 899
BciT130I CCWGG 1 cut(s) 842
BcoDI GTCTC 3 cut(s) 174, 420, 1023
BfaI CTAG 4 cut(s) 258, 444, 867, 1110
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 510, 888
BlsI GCNGC 2 cut(s) 511, 889
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 2 cut(s) 602, 838
BmgT120I GGNCC 2 cut(s) 602, 838
BmiI GGNNCC 1 cut(s) 839
BmrFI CCNGG 1 cut(s) 842
BmsI GCATC 3 cut(s) 291, 655, 884
Bpu14I TTCGAA 2 cut(s) 457, 773
BpuEI CTTGAG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 814, 1099
BsaWI WCCGGW 1 cut(s) 543
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 1126
Bse118I RCCGGY 1 cut(s) 543
Bse1I ACTGG 4 cut(s) 214, 336, 384, 596
BseBI CCWGG 1 cut(s) 842
BseCI ATCGAT 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 814, 1099
BseLI CCNNNNNNNGG 2 cut(s) 390, 1126
BseNI ACTGG 4 cut(s) 214, 336, 384, 596
BseSI GKGCMC 2 cut(s) 615, 681
BseXI GCAGC 2 cut(s) 496, 899
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 702, 704
BshFI GGCC 1 cut(s) 733
BshTI ACCGGT 1 cut(s) 543
BshVI ATCGAT 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 1 cut(s) 544
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 2 cut(s) 390, 1126
BsmAI GTCTC 3 cut(s) 174, 420, 1023
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 1 cut(s) 733
Bsp119I TTCGAA 2 cut(s) 457, 773
Bsp1286I GDGCHC 3 cut(s) 615, 681, 976
Bsp143I GATC 3 cut(s) 478, 646, 982
BspACI CCGC 1 cut(s) 1055
BspANI GGCC 1 cut(s) 733
BspDI ATCGAT 1 cut(s) 377
BspFNI CGCG 2 cut(s) 702, 704
BspHI TCATGA 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 839
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 486
BspT104I TTCGAA 2 cut(s) 457, 773
BsrFI RCCGGY 1 cut(s) 543
BsrI ACTGG 4 cut(s) 214, 336, 384, 596
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 814, 1099
BssMI GATC 3 cut(s) 478, 646, 982
BssT1I CCWWGG 2 cut(s) 814, 1099
Bst2UI CCWGG 1 cut(s) 842
BstBAI YACGTR 1 cut(s) 420
BstBI TTCGAA 2 cut(s) 457, 773
BstC8I GCNNGC 2 cut(s) 1077, 1096
BstDEI CTNAG 2 cut(s) 401, 935
BstFNI CGCG 2 cut(s) 702, 704
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 3 cut(s) 481, 649, 985
BstMAI GTCTC 3 cut(s) 174, 420, 1023
BstMBI GATC 3 cut(s) 478, 646, 982
BstMWI GCNNNNNNNGC 7 cut(s) 506, 685, 863, 872, 937, 1072, 1085
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 2 cut(s) 956, 1003
BstSCI CCNGG 1 cut(s) 840
BstSLI GKGCMC 2 cut(s) 615, 681
BstUI CGCG 2 cut(s) 702, 704
BstV1I GCAGC 2 cut(s) 496, 899
Bsu15I ATCGAT 1 cut(s) 377
BsuRI GGCC 1 cut(s) 733
BsuTUI ATCGAT 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 1077, 1096
CciI TCATGA 1 cut(s) 655
CfoI GCGC 1 cut(s) 704
Cfr10I RCCGGY 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 602, 838
ClaI ATCGAT 1 cut(s) 377
CseI GACGC 2 cut(s) 437, 693
Csp6I GTAC 4 cut(s) 219, 255, 417, 505
CspAI ACCGGT 1 cut(s) 543
CviAII CATG 6 cut(s) 616, 650, 656, 796, 953, 1000
CviQI GTAC 4 cut(s) 219, 255, 417, 505
DdeI CTNAG 2 cut(s) 401, 935
DpnI GATC 3 cut(s) 480, 648, 984
DpnII GATC 3 cut(s) 478, 646, 982
DraI TTTAAA 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 814, 1099
Eco147I AGGCCT 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 976
Eco47I GGWCC 2 cut(s) 602, 838
Eco57I CTGAAG 1 cut(s) 756
EcoO109I RGGNCCY 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 814, 1099
EcoT38I GRGCYC 1 cut(s) 976
ErhI CCWWGG 2 cut(s) 814, 1099
Esp3I CGTCTC 1 cut(s) 420
FaeI CATG 6 cut(s) 619, 653, 659, 799, 956, 1003
FaqI GGGAC 1 cut(s) 851
FatI CATG 6 cut(s) 615, 649, 655, 795, 952, 999
Fnu4HI GCNGC 2 cut(s) 510, 888
FriOI GRGCYC 1 cut(s) 976
Fsp4HI GCNGC 2 cut(s) 510, 888
FspBI CTAG 4 cut(s) 258, 444, 867, 1110
GlaI GCGC 1 cut(s) 703
GluI GCNGC 2 cut(s) 510, 888
GsaI CCCAGC 1 cut(s) 265
HaeIII GGCC 1 cut(s) 733
HapII CCGG 1 cut(s) 544
HgaI GACGC 2 cut(s) 437, 693
HhaI GCGC 1 cut(s) 704
Hin1II CATG 6 cut(s) 619, 653, 659, 799, 956, 1003
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 3 cut(s) 181, 322, 374
HpaI GTTAAC 1 cut(s) 1132
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 3 cut(s) 255, 613, 1132
Hpy188I TCNGA 4 cut(s) 43, 52, 478, 1048
Hpy188III TCNNGA 5 cut(s) 344, 482, 605, 656, 986
Hpy8I GTNNAC 3 cut(s) 255, 613, 1132
Hpy99I CGWCG 1 cut(s) 709
HpyAV CCTTC 5 cut(s) 106, 731, 739, 1004, 1062
HpyCH4IV ACGT 2 cut(s) 419, 1059
HpyCH4V TGCA 6 cut(s) 215, 304, 613, 668, 788, 1079
HpyF10VI GCNNNNNNNGC 7 cut(s) 506, 685, 863, 872, 937, 1072, 1085
HpyF3I CTNAG 2 cut(s) 401, 935
HpySE526I ACGT 2 cut(s) 419, 1059
Hsp92II CATG 6 cut(s) 619, 653, 659, 799, 956, 1003
HspAI GCGC 1 cut(s) 702
KspAI GTTAAC 1 cut(s) 1132
Kzo9I GATC 3 cut(s) 478, 646, 982
Lsp1109I GCAGC 2 cut(s) 496, 899
LweI GCATC 3 cut(s) 291, 655, 884
MaeI CTAG 4 cut(s) 258, 444, 867, 1110
MaeII ACGT 2 cut(s) 419, 1059
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 480, 648, 984
MboI GATC 3 cut(s) 478, 646, 982
MboII GAAGA 6 cut(s) 251, 671, 683, 787, 812, 974
MhlI GDGCHC 3 cut(s) 615, 681, 976
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 371, 536
MnlI CCTC 6 cut(s) 639, 701, 828, 847, 865, 1065
MseI TTAA 2 cut(s) 9, 1131
MslI CAYNNNNRTG 2 cut(s) 654, 660
MspA1I CMGCKG 1 cut(s) 890
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 1 cut(s) 842
MvaI CCWGG 1 cut(s) 842
MvnI CGCG 2 cut(s) 702, 704
MwoI GCNNNNNNNGC 7 cut(s) 506, 685, 863, 872, 937, 1072, 1085
NdeII GATC 3 cut(s) 478, 646, 982
NlaIII CATG 6 cut(s) 619, 653, 659, 799, 956, 1003
NlaIV GGNNCC 1 cut(s) 839
NspI RCATGY 2 cut(s) 956, 1003
NspV TTCGAA 2 cut(s) 457, 773
PagI TCATGA 1 cut(s) 655
PceI AGGCCT 1 cut(s) 733
PciI ACATGT 2 cut(s) 952, 999
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PfeI GAWTC 2 cut(s) 181, 374
PflMI CCANNNNNTGG 2 cut(s) 390, 1126
PinAI ACCGGT 1 cut(s) 543
PkrI GCNGC 2 cut(s) 511, 889
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Ppu21I YACGTR 1 cut(s) 420
PpuMI RGGWCCY 1 cut(s) 838
PscI ACATGT 2 cut(s) 952, 999
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 840
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 1 cut(s) 839
PspPI GGNCC 2 cut(s) 602, 838
PspPPI RGGWCCY 1 cut(s) 838
PvuII CAGCTG 1 cut(s) 890
RsaI GTAC 4 cut(s) 220, 256, 418, 506
RsaNI GTAC 4 cut(s) 219, 255, 417, 505
RseI CAYNNNNRTG 2 cut(s) 654, 660
SaqAI TTAA 2 cut(s) 9, 1131
SatI GCNGC 2 cut(s) 510, 888
Sau3AI GATC 3 cut(s) 478, 646, 982
Sau96I GGNCC 2 cut(s) 602, 838
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 3 cut(s) 615, 681, 976
SfaNI GCATC 3 cut(s) 291, 655, 884
SfuI TTCGAA 2 cut(s) 457, 773
SinI GGWCC 2 cut(s) 602, 838
SmiMI CAYNNNNRTG 2 cut(s) 654, 660
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 1 cut(s) 1055
SspI AATATT 2 cut(s) 454, 562
SspMI CTAG 4 cut(s) 258, 444, 867, 1110
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 1 cut(s) 840
StyI CCWWGG 2 cut(s) 814, 1099
TaiI ACGT 2 cut(s) 422, 1062
TaqI TCGA 4 cut(s) 377, 457, 713, 773
TaqII GACCGA 1 cut(s) 590
TatI WGTACW 1 cut(s) 254
TfiI GAWTC 2 cut(s) 181, 374
Tru1I TTAA 2 cut(s) 9, 1131
Tru9I TTAA 2 cut(s) 9, 1131
TscAI CASTG 1 cut(s) 214
TseI GCWGC 2 cut(s) 509, 887
TspDTI ATGAA 7 cut(s) 118, 320, 632, 644, 672, 784, 1010
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 2 cut(s) 390, 1126
VneI GTGCAC 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 602, 838
XapI RAATTY 6 cut(s) 26, 66, 581, 902, 1024, 1031
XceI RCATGY 2 cut(s) 956, 1003
XspI CTAG 4 cut(s) 258, 444, 867, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.