Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

26403949 .. 26404912

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGGGAAGCTTTTTCCAATTGGCAATACGAAGAAGAGATTCAATTATGCGATTCGTGGGCACGTATGACCGTATGCCCAATCACCGGCAAACAAATATCCTTATCAAGGTTATGGGAAAATTTTTTTGCCGATTATGTGCAACATTGGGATGGTCCGCCAACAAGCCGATGTCCTCAAGCTCTCCAATCCCATTTTCGAAATTTGAAGACAATGCTCAAGGTTTGGCACAATGCGCAAATGACCTCCCGCAATCGTATTGCAAGCGGCACCAATAGAATGGATGAGAACCATCCATACTTTGTTGATCCGCCATCTACTCCATGTCCACCGGCACCATATTTGACACCACGTCCTTTCCAAAATGAGTCTCCAATTGATTTGGATGATGAAGTAGTTGCGGAGACACCACCAAGCTCAATTCCAAGACCAATTGGAATAAAGAAAGCCAAAGAAGCAAAGAGAAAAGGAAAGATGACACAAGATGCAGCGGAATGTATGGCTCTTGCCATTCAATCCATGGCCGAATCAACTCAAGCTTCTGTTGAGCTAGTGAAGAAAAGAAACGAAGAAATAGTTGCTCACACAAGAAAAGTATTTGAATTTGAAGAGGCAAAGGAAGATGCAAGAATTATGGCCATGGATACTAATTCATGGTCTCCGGAAAGAATTAGATGGTGGAAAGATAGGAAGAGAGGTATTATGGCAAAAACATTGTTAGGTGGCGATAGCAGCAATGACGGCGGTAGCGGCAATGACGGAGGTAGCAACGATCCATACATACCTCAATTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

266

Amino Acids

30.07

Weight (kDa)

5.83

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	110 - 222	6.5e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	269, 334
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	8 cut(s)	158, 250, 267, 311, 401, 491, 744, 750
AclWI	GGATC	2 cut(s)	302, 767
AcoI	YGGCCR	2 cut(s)	522, 636
AcsI	RAATTY	3 cut(s)	121, 202, 602
AfiI	CCNNNNNNNGG	2 cut(s)	86, 108
AgsI	TTSAA	5 cut(s)	44, 208, 515, 602, 608
AhdI	GACNNNNNGTC	1 cut(s)	351
AjiI	CACGTC	1 cut(s)	353
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	11, 182, 417, 539, 550
AluI	AGCT	5 cut(s)	11, 182, 417, 539, 550
Alw26I	GTCTC	3 cut(s)	375, 398, 663
AlwI	GGATC	2 cut(s)	302, 767
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	2 cut(s)	522, 636
ApeKI	GCWGC	2 cut(s)	488, 732
ApoI	RAATTY	3 cut(s)	121, 202, 602
Asp700I	GAANNNNTTC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	638
BanI	GGYRCC	2 cut(s)	269, 334
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	500, 744
BccI	CCATC	4 cut(s)	146, 300, 322, 669
BceAI	ACGGC	1 cut(s)	757
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	375, 398, 663
BfaI	CTAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	637
BisI	GCNGC	4 cut(s)	268, 489, 733, 751
BlsI	GCNGC	4 cut(s)	269, 490, 734, 752
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	271, 336
BmsI	GCATC	2 cut(s)	475, 613
BpiI	GAAGAC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	3 cut(s)	162, 203, 519
BsaAI	YACGTR	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	519, 639
BsaWI	WCCGGW	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 108
Bse118I	RCCGGY	2 cut(s)	86, 331
Bse3DI	GCAATG	2 cut(s)	742, 760
BseAI	TCCGGA	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	519, 639
BseGI	GGATG	4 cut(s)	157, 289, 292, 391
BseLI	CCNNNNNNNGG	2 cut(s)	86, 108
BseMI	GCAATG	2 cut(s)	742, 760
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	500, 744
BshFI	GGCC	2 cut(s)	524, 638
BshNI	GGYRCC	2 cut(s)	269, 334
BsiSI	CCGG	3 cut(s)	87, 332, 662
BslI	CCNNNNNNNGG	2 cut(s)	86, 108
BsmAI	GTCTC	3 cut(s)	375, 398, 663
BsnI	GGCC	2 cut(s)	524, 638
Bso31I	GGTCTC	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	2 cut(s)	307, 772
Bsp19I	CCATGG	2 cut(s)	519, 639
BspACI	CCGC	8 cut(s)	158, 250, 267, 311, 401, 491, 744, 750
BspANI	GGCC	2 cut(s)	524, 638
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	271, 336
BspPI	GGATC	2 cut(s)	302, 767
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	2 cut(s)	269, 334
BspTNI	GGTCTC	1 cut(s)	663
BsrDI	GCAATG	2 cut(s)	742, 760
BsrFI	RCCGGY	2 cut(s)	86, 331
BssAI	RCCGGY	2 cut(s)	86, 331
BssECI	CCNNGG	2 cut(s)	519, 639
BssMI	GATC	2 cut(s)	307, 772
BssT1I	CCWWGG	2 cut(s)	519, 639
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	3 cut(s)	30, 603, 686
BstBAI	YACGTR	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	265
BstDSI	CCRYGG	2 cut(s)	519, 639
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	157, 289, 292, 391
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	310, 775
BstMAI	GTCTC	3 cut(s)	375, 398, 663
BstMBI	GATC	2 cut(s)	307, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 455, 732, 741, 750
BstSLI	GKGCMC	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	500, 744
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	524, 638
BtgI	CCRYGG	2 cut(s)	519, 639
BtrI	CACGTC	1 cut(s)	353
BtsCI	GGATG	4 cut(s)	157, 289, 292, 391
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	2 cut(s)	86, 331
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	4 cut(s)	324, 520, 640, 654
DpnI	GATC	2 cut(s)	309, 774
DpnII	GATC	2 cut(s)	307, 772
DriI	GACNNNNNGTC	1 cut(s)	351
EaeI	YGGCCR	2 cut(s)	522, 636
Eam1104I	CTCTTC	3 cut(s)	30, 603, 686
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	3 cut(s)	30, 603, 686
EciI	GGCGGA	2 cut(s)	147, 300
Eco130I	CCWWGG	2 cut(s)	519, 639
Eco31I	GGTCTC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	519, 639
ErhI	CCWWGG	2 cut(s)	519, 639
FaeI	CATG	4 cut(s)	327, 523, 643, 657
FatI	CATG	4 cut(s)	323, 519, 639, 653
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	268, 489, 733, 751
FokI	GGATG	4 cut(s)	164, 279, 296, 398
Fsp4HI	GCNGC	4 cut(s)	268, 489, 733, 751
FspBI	CTAG	1 cut(s)	551
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	4 cut(s)	268, 489, 733, 751
HaeIII	GGCC	2 cut(s)	524, 638
HapII	CCGG	3 cut(s)	87, 332, 662
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	4 cut(s)	327, 523, 643, 657
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	2 cut(s)	9, 537
HinfI	GANTC	4 cut(s)	40, 53, 368, 527
HpaII	CCGG	3 cut(s)	87, 332, 662
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	64, 352
HpyCH4V	TGCA	4 cut(s)	142, 263, 488, 626
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 455, 732, 741, 750
HpySE526I	ACGT	2 cut(s)	64, 352
Hsp92II	CATG	4 cut(s)	327, 523, 643, 657
HspAI	GCGC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	2 cut(s)	307, 772
LpnPI	CCDG	3 cut(s)	100, 345, 675
Lsp1109I	GCAGC	2 cut(s)	500, 744
LweI	GCATC	2 cut(s)	475, 613
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	2 cut(s)	64, 352
MalI	GATC	2 cut(s)	309, 774
MboI	GATC	2 cut(s)	307, 772
MboII	GAAGA	8 cut(s)	44, 47, 220, 568, 581, 620, 632, 703
MfeI	CAATTG	3 cut(s)	19, 375, 432
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	638
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	6 cut(s)	186, 256, 604, 689, 755, 795
Mox20I	TGGCCA	1 cut(s)	638
MroI	TCCGGA	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	3 cut(s)	87, 332, 662
MunI	CAATTG	3 cut(s)	19, 375, 432
MwoI	GCNNNNNNNGC	5 cut(s)	235, 455, 732, 741, 750
NcoI	CCATGG	2 cut(s)	519, 639
NdeII	GATC	2 cut(s)	307, 772
NlaIII	CATG	4 cut(s)	327, 523, 643, 657
NlaIV	GGNNCC	2 cut(s)	271, 336
NsbI	TGCGCA	1 cut(s)	237
NspV	TTCGAA	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	40, 53, 527
PkrI	GCNGC	4 cut(s)	269, 490, 734, 752
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	271, 336
PspPI	GGNCC	1 cut(s)	155
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
RseI	CAYNNNNRTG	1 cut(s)	150
SatI	GCNGC	4 cut(s)	268, 489, 733, 751
Sau3AI	GATC	2 cut(s)	307, 772
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	475, 613
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	177, 218, 534
SmoI	CTYRAG	3 cut(s)	177, 218, 534
SsiI	CCGC	8 cut(s)	158, 250, 267, 311, 401, 491, 744, 750
SspMI	CTAG	1 cut(s)	551
StyI	CCWWGG	2 cut(s)	519, 639
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	67, 355
TaqI	TCGA	1 cut(s)	199
TauI	GCSGC	2 cut(s)	270, 753
TfiI	GAWTC	3 cut(s)	40, 53, 527
TseI	GCWGC	2 cut(s)	488, 732
TspDTI	ATGAA	2 cut(s)	405, 642
TspGWI	ACGGA	1 cut(s)	774
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	3 cut(s)	121, 202, 602
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.