Rh4DG043100

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000206
Physical Location & Seq
Forward (+)
7012523 .. 7014042
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043100.1

Sequence Viewer

Length: 852 bp
ATGTCAAATTCAAAGTCAGGCACGAAGAGGGCGATTGATGAGGAAGTGCAATTATGCAAGTCTTGGGCAACTATTACTTCATGTGGTTCTGTAGGAAAGGATCAAGATGCCAAGCATCTATGGCGTAATATTCATGCTCACTACGAACAAAATTGGGAAGGTGATCAAGATGAAGTTCGATCCCATCAAGCACTCGAAAGTAGGTGGAAAAATTTAAAAAAAAATTTGGCGAGTTGGCATGATGCGGTGAGCAAAGCGGAGCACTTTCATGAGAGCGGCTTGAACAACATGGACAAGTTATATCAAACCCACATGTATTACAAGCGTGCAAATAAGGGTAAGGGTTTCACCTATATTCACTGTTGGGAAGTGGTAAAGGATCACCCAAAGTTCAAGGATCCACCAAAAGGGGTGACACAACCTTCACAGGTAGTTGATGATTCACCAATTCAGTCTACTGACAACGATGAAGAGTGCATCGCCAAGCCATCTGATGAAAGACCTCCGGGAAGAAAGGCTCAAAAGAGAGATGCTAAGCTCAAAGGGAAGATTAGCGAAAAGCAAGATCGATATATTCAAGCAATGGAAAACATTGCATTTAATAGTGAAGCTAGTAGAGAGGCCACAAGAATCAGAGATGAAGAAAATAGAAAGCACATCGAGTGGCAGCAACAAATGGAAGTGGAAAAGCAACAACTAGAACTACAAAAAGTGCAACTAGAAATCCAAAAGGAGGAAAATTGGGTTATGGCTAAAGACGTTAGCATAATGACTCCAGAATCAAAAGCATGGTGGAAGAAAAGAAAGAAAGCTATCCGTGACAAAACCTCAGATGATTGGGAGGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

283

Amino Acids

33.17

Weight (kDa)

8.18

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 114 - 272 5.1e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 276
AccI GTMKAC 1 cut(s) 455
AciI CCGC 3 cut(s) 245, 257, 276
AclWI GGATC 5 cut(s) 108, 174, 387, 392, 405
AcsI RAATTY 3 cut(s) 7, 211, 223
AfiI CCNNNNNNNGG 2 cut(s) 407, 733
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 12, 283, 394, 578
AluBI AGCT 3 cut(s) 538, 611, 812
AluI AGCT 3 cut(s) 538, 611, 812
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 5 cut(s) 108, 174, 387, 392, 405
AoxI GGCC 1 cut(s) 621
ApeKI GCWGC 1 cut(s) 667
ApoI RAATTY 3 cut(s) 7, 211, 223
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 6 cut(s) 173, 259, 340, 374, 424, 435
BamHI GGATCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 679
BccI CCATC 2 cut(s) 192, 496
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 507
BfaI CTAG 3 cut(s) 612, 698, 719
BfmI CTRYAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 277, 668
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 2 cut(s) 278, 669
Bme1390I CCNGG 1 cut(s) 507
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 5 cut(s) 97, 124, 232, 486, 520
BpmI CTGGAG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 534
BpuMI CCSGG 1 cut(s) 507
Bsa29I ATCGAT 1 cut(s) 568
BsaXI ACNNNNNCTCC 1 cut(s) 833
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 733
Bse3DI GCAATG 2 cut(s) 588, 591
BseCI ATCGAT 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 407, 733
BseMI GCAATG 2 cut(s) 588, 591
BseMII CTCAG 1 cut(s) 843
BseXI GCAGC 1 cut(s) 679
BshFI GGCC 1 cut(s) 623
BshVI ATCGAT 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 2 cut(s) 407, 733
BsnI GGCC 1 cut(s) 623
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 6 cut(s) 100, 163, 179, 379, 397, 565
Bsp1720I GCTNAGC 1 cut(s) 534
BspACI CCGC 3 cut(s) 245, 257, 276
BspANI GGCC 1 cut(s) 623
BspCNI CTCAG 1 cut(s) 842
BspDI ATCGAT 1 cut(s) 568
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 5 cut(s) 108, 174, 387, 392, 405
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 2 cut(s) 588, 591
BssMI GATC 6 cut(s) 100, 163, 179, 379, 397, 565
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 20, 465
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 534, 829
BstKTI GATC 6 cut(s) 103, 166, 182, 382, 400, 568
BstMBI GATC 6 cut(s) 100, 163, 179, 379, 397, 565
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 679
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
Bsu15I ATCGAT 1 cut(s) 568
BsuRI GGCC 1 cut(s) 623
BsuTUI ATCGAT 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 327
CciI TCATGA 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 568
CviAII CATG 7 cut(s) 81, 134, 239, 269, 289, 313, 789
CviJI RGCY 8 cut(s) 279, 487, 518, 538, 611, 623, 752, 812
CviKI_1 RGCY 8 cut(s) 279, 487, 518, 538, 611, 623, 752, 812
DdeI CTNAG 2 cut(s) 534, 829
DpnI GATC 6 cut(s) 102, 165, 181, 381, 399, 567
DpnII GATC 6 cut(s) 100, 163, 179, 379, 397, 565
DraI TTTAAA 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 20, 465
EarI CTCTTC 2 cut(s) 20, 465
FaeI CATG 7 cut(s) 84, 137, 242, 272, 292, 316, 792
FatI CATG 7 cut(s) 80, 133, 238, 268, 288, 312, 788
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 455
Fnu4HI GCNGC 2 cut(s) 277, 668
Fsp4HI GCNGC 2 cut(s) 277, 668
FspBI CTAG 3 cut(s) 612, 698, 719
GluI GCNGC 2 cut(s) 277, 668
GsuI CTGGAG 1 cut(s) 759
HaeIII GGCC 1 cut(s) 623
HapII CCGG 1 cut(s) 506
Hin1II CATG 7 cut(s) 84, 137, 242, 272, 292, 316, 792
HinfI GANTC 4 cut(s) 440, 630, 772, 779
HpaII CCGG 1 cut(s) 506
HphI GGTGA 6 cut(s) 173, 259, 340, 374, 424, 435
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 3 cut(s) 493, 635, 832
Hpy188III TCNNGA 4 cut(s) 104, 167, 269, 776
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 2 cut(s) 152, 432
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 759
HpyCH4V TGCA 6 cut(s) 49, 57, 329, 477, 596, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 534, 829
HpySE526I ACGT 1 cut(s) 759
Hsp92II CATG 7 cut(s) 84, 137, 242, 272, 292, 316, 792
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 6 cut(s) 100, 163, 179, 379, 397, 565
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 3, 413, 519, 789
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 5 cut(s) 97, 124, 232, 486, 520
MaeI CTAG 3 cut(s) 612, 698, 719
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 2 cut(s) 412, 818
MalI GATC 6 cut(s) 102, 165, 181, 381, 399, 567
MbiI CCGCTC 1 cut(s) 276
MboI GATC 6 cut(s) 100, 163, 179, 379, 397, 565
MboII GAAGA 6 cut(s) 37, 482, 522, 559, 653, 808
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 7 cut(s) 7, 50, 151, 211, 223, 447, 739
MlyI GAGTC 1 cut(s) 766
MnlI CCTC 7 cut(s) 21, 34, 513, 613, 727, 835, 838
MseI TTAA 2 cut(s) 215, 600
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 507
NdeII GATC 6 cut(s) 100, 163, 179, 379, 397, 565
NlaIII CATG 7 cut(s) 84, 137, 242, 272, 292, 316, 792
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 412, 818
NspI RCATGY 1 cut(s) 316
PagI TCATGA 1 cut(s) 268
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PfeI GAWTC 3 cut(s) 440, 630, 779
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 2 cut(s) 278, 669
PleI GAGTC 1 cut(s) 766
PpsI GAGTC 1 cut(s) 766
PscI ACATGT 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 397
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 2 cut(s) 215, 600
SatI GCNGC 2 cut(s) 277, 668
Sau3AI GATC 6 cut(s) 100, 163, 179, 379, 397, 565
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 5 cut(s) 97, 124, 232, 486, 520
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 267
Sse9I AATT 7 cut(s) 7, 50, 151, 211, 223, 447, 739
SsiI CCGC 3 cut(s) 245, 257, 276
SspI AATATT 1 cut(s) 130
SspMI CTAG 3 cut(s) 612, 698, 719
StyD4I CCNGG 1 cut(s) 505
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 762
TaqI TCGA 4 cut(s) 178, 195, 568, 660
TasI AATT 7 cut(s) 7, 50, 151, 211, 223, 447, 739
TauI GCSGC 1 cut(s) 279
TfiI GAWTC 3 cut(s) 440, 630, 779
Tru1I TTAA 2 cut(s) 215, 600
Tru9I TTAA 2 cut(s) 215, 600
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 2 cut(s) 412, 818
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 2 cut(s) 412, 818
TspDTI ATGAA 7 cut(s) 69, 122, 186, 257, 483, 510, 654
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 1 cut(s) 365
XapI RAATTY 3 cut(s) 7, 211, 223
XceI RCATGY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 455
XspI CTAG 3 cut(s) 612, 698, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.