pycom03g16280

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
17445338 .. 17446117
780 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16280.2

Sequence Viewer

Length: 429 bp
ATGTACCTTACACAACAATTTCATATTTTCTCAACTACTTTCAATCACATTCCTTTCTTTGTCTCAAAGTTTGAATCCTTTTTTTTCAACAAAATGACCACTGGTGCAGGTACGAATTGGTCGCTTATTGAAGATGTTGCGTTGTGTACTAGCTGGGTTGAAGTTACTCATAGTTCGCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTTTCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATGA

Protein Analysis

143

Amino Acids

16.43

Weight (kDa)

9.1

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 282
AclWI GGATC 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 321
AfaI GTAC 5 cut(s) 5, 112, 148, 310, 398
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 6 cut(s) 43, 74, 88, 131, 161, 383
AluBI AGCT 3 cut(s) 153, 335, 392
AluI AGCT 3 cut(s) 153, 335, 392
Alw26I GTCTC 2 cut(s) 67, 312
AlwI GGATC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 401
AsuII TTCGAA 1 cut(s) 349
BbvI GCAGC 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 67, 312
BfaI CTAG 2 cut(s) 150, 336
BfuAI ACCTGC 1 cut(s) 98
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
BmsI GCATC 1 cut(s) 183
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 106, 276
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 282
BseNI ACTGG 2 cut(s) 106, 276
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 126
BshVI ATCGAT 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 67, 312
BsmBI CGTCTC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 1 cut(s) 370
BspDI ATCGAT 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 378
BspT104I TTCGAA 1 cut(s) 349
BsrI ACTGG 2 cut(s) 106, 276
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 1 cut(s) 370
BssNI GRCGYC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 324
BstACI GRCGYC 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 1 cut(s) 293
BstKTI GATC 1 cut(s) 373
BstMAI GTCTC 2 cut(s) 67, 312
BstMBI GATC 1 cut(s) 370
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 269
BsuTUI ATCGAT 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 269
CseI GACGC 1 cut(s) 329
Csp6I GTAC 5 cut(s) 4, 111, 147, 309, 397
CviJI RGCY 4 cut(s) 153, 297, 335, 392
CviKI_1 RGCY 4 cut(s) 153, 297, 335, 392
CviQI GTAC 5 cut(s) 4, 111, 147, 309, 397
DdeI CTNAG 1 cut(s) 293
DpnI GATC 1 cut(s) 372
DpnII GATC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 312
FaiI YATR 3 cut(s) 24, 171, 225
Fnu4HI GCNGC 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 2 cut(s) 150, 336
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 157
HgaI GACGC 1 cut(s) 329
Hin1I GRCGYC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 3 cut(s) 74, 214, 266
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 236, 374
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 107, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 311
Hsp92I GRCGYC 1 cut(s) 321
Kzo9I GATC 1 cut(s) 370
LpnPI CCDG 5 cut(s) 87, 93, 139, 289, 359
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 1 cut(s) 183
MaeI CTAG 2 cut(s) 150, 336
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 372
MboI GATC 1 cut(s) 370
MboII GAAGA 1 cut(s) 143
MluCI AATT 6 cut(s) 17, 115, 229, 243, 287, 361
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 1 cut(s) 370
NspV TTCGAA 1 cut(s) 349
PcsI WCGNNNNNNNCGW 1 cut(s) 308
PfeI GAWTC 2 cut(s) 74, 266
PflMI CCANNNNNTGG 1 cut(s) 282
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Ppu21I YACGTR 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 153
RsaI GTAC 5 cut(s) 5, 112, 148, 310, 398
RsaNI GTAC 5 cut(s) 4, 111, 147, 309, 397
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 370
SchI GAGTC 1 cut(s) 223
SetI ASST 6 cut(s) 9, 112, 155, 314, 337, 394
SfaNI GCATC 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 6 cut(s) 17, 115, 229, 243, 287, 361
SspI AATATT 1 cut(s) 346
SspMI CTAG 2 cut(s) 150, 336
StyI CCWWGG 1 cut(s) 324
TaiI ACGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 269, 349
TasI AATT 6 cut(s) 17, 115, 229, 243, 287, 361
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 2 cut(s) 74, 266
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 11, 212
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 282
XspI CTAG 2 cut(s) 150, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.