FvH4_5g15962

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000206
Physical Location & Seq
Reverse (-)
9051080 .. 9052077
998 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15962.t1

Sequence Viewer

Length: 813 bp
ATGGCTAATTGGCATCCATGTGAAGAAATTCAATTGTGTAGATCATGGGTACGTTTTACTACATGCACCATAACTGGCAATCGTCAATCAAGTAACAAGTTATGGGAAAAAATTCATGGCGACTTTAAGGCAAATTGGGAAGGAAATCCTGACGATTGTCAAAGCCAACAAGGCCTACAATCCCATTGGCGCAATTTGAAGGCCACACTCAAAGTTTGGCATGAATCTTTGCAAAAAGCCGCACACAATCGACGAAGTGGTGAAAATCTAATGGATGAGCTCAAGCTAATTATGCCGACAAAAGTAAAGGGAAAGAGTTTGATAAACAAGCATGTTGGGAGGAAGTTAAGCAACATCGGTCTTTCATGGATCCACCAAGAACCCCTCCTGCGGCCGACATTTGACTCGAAAGAGACGGATTCTCCCACTAACTTGGATGAGGAAGAAGTTTTGGAAACACCACCAAGTCCATCTGCAAGGCCACAGGGAATAAAGGCTTCAAAAGAAGCAATAAGAAAAGGAAAGAAGAAGCAAGAGAAAGATGACCGTGTAGCAATTGCAATAGAAAGTCTTGCTCGATCCACTGCTGCTACTGTTGAGCTAATTAGGAAAAGGGATGAGGATTCCCGATATCACGCGGCAAGAGTATTGGCACTTGAGGAGGAAAAAGAACACACAAAAATTATGTCAAAAGATACTACTACCTTGTCTCCGGGTTCAAAGCTATGGTGGAAAAAAAGGAAAGATGCGATTAAAGCAAAAGCAGGAGAAGATGTTAGTAGCAGTGTTGAAGACACCCAATGGTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

271

Amino Acids

30.89

Weight (kDa)

9.13

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 135 - 251 6.3e-07 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 638
AciI CCGC 3 cut(s) 240, 391, 638
AclWI GGATC 3 cut(s) 364, 377, 573
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 2 cut(s) 27, 111
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 5 cut(s) 32, 199, 501, 720, 791
AluBI AGCT 4 cut(s) 280, 286, 601, 724
AluI AGCT 4 cut(s) 280, 286, 601, 724
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 2 cut(s) 407, 714
AlwI GGATC 3 cut(s) 364, 377, 573
AoxI GGCC 4 cut(s) 172, 201, 392, 479
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 2 cut(s) 27, 111
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 2 cut(s) 27, 111
AspLEI GCGC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 714
AsuHPI GGTGA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 369
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 574
BccI CCATC 1 cut(s) 478
BcnI CCSGG 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 407, 714
BglI GCCNNNNNGGC 1 cut(s) 171
BisI GCNGC 4 cut(s) 240, 392, 588, 639
BlsI GCNGC 4 cut(s) 241, 393, 589, 640
Bme1390I CCNGG 1 cut(s) 714
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 2 cut(s) 22, 736
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 798
BpuEI CTTGAG 2 cut(s) 266, 677
BpuMI CCSGG 1 cut(s) 714
BsaXI ACNNNNNCTCC 6 cut(s) 406, 436, 694, 724, 759, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 79
BseGI GGATG 4 cut(s) 13, 280, 442, 622
BseLI CCNNNNNNNGG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 674
BseX3I CGGCCG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 638
Bsh1285I CGRYCG 1 cut(s) 395
BshFI GGCC 4 cut(s) 174, 203, 394, 481
BsiEI CGRYCG 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 282
BsiSI CCGG 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 407, 714
BsmBI CGTCTC 1 cut(s) 407
BsnI GGCC 4 cut(s) 174, 203, 394, 481
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 41, 369, 578
BspACI CCGC 3 cut(s) 240, 391, 638
BspANI GGCC 4 cut(s) 174, 203, 394, 481
BspFNI CGCG 1 cut(s) 638
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 3 cut(s) 364, 377, 573
BsrI ACTGG 1 cut(s) 79
BssMI GATC 3 cut(s) 41, 369, 578
Bst4CI ACNGT 2 cut(s) 548, 595
BstF5I GGATG 4 cut(s) 13, 280, 442, 622
BstFNI CGCG 1 cut(s) 638
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 3 cut(s) 44, 372, 581
BstMAI GTCTC 2 cut(s) 407, 714
BstMBI GATC 3 cut(s) 41, 369, 578
BstMCI CGRYCG 1 cut(s) 395
BstMWI GCNNNNNNNGC 3 cut(s) 171, 292, 755
BstNSI RCATGY 2 cut(s) 66, 335
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 712
BstUI CGCG 1 cut(s) 638
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 369
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 1 cut(s) 369
BstZI CGGCCG 1 cut(s) 392
BsuRI GGCC 4 cut(s) 174, 203, 394, 481
BtsCI GGATG 4 cut(s) 13, 280, 442, 622
BtsI GCAGTG 2 cut(s) 582, 790
BtsIMutI CAGTG 2 cut(s) 582, 790
CfoI GCGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 50
CviAII CATG 7 cut(s) 18, 45, 63, 116, 221, 332, 366
CviQI GTAC 1 cut(s) 50
DpnI GATC 3 cut(s) 43, 371, 580
DpnII GATC 3 cut(s) 41, 369, 578
EaeI YGGCCR 1 cut(s) 392
EagI CGGCCG 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 280
EclXI CGGCCG 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 282
Eco32I GATATC 1 cut(s) 632
Eco52I CGGCCG 1 cut(s) 392
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoRV GATATC 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 7 cut(s) 21, 48, 66, 119, 224, 335, 369
FatI CATG 7 cut(s) 17, 44, 62, 115, 220, 331, 365
Fnu4HI GCNGC 4 cut(s) 240, 392, 588, 639
FokI GGATG 3 cut(s) 287, 449, 629
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 4 cut(s) 240, 392, 588, 639
GlaI GCGC 1 cut(s) 191
GluI GCNGC 4 cut(s) 240, 392, 588, 639
HaeIII GGCC 4 cut(s) 174, 203, 394, 481
HapII CCGG 1 cut(s) 713
HhaI GCGC 1 cut(s) 192
Hin1II CATG 7 cut(s) 21, 48, 66, 119, 224, 335, 369
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HinfI GANTC 4 cut(s) 224, 404, 419, 623
HpaII CCGG 1 cut(s) 713
HphI GGTGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 149, 627
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 134, 193
HpyCH4III ACNGT 2 cut(s) 548, 595
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 4 cut(s) 66, 232, 476, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 292, 755
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 7 cut(s) 21, 48, 66, 119, 224, 335, 369
HspAI GCGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 41, 369, 578
LpnPI CCDG 6 cut(s) 60, 162, 401, 470, 726, 750
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 2 cut(s) 22, 736
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 43, 371, 580
MboI GATC 3 cut(s) 41, 369, 578
MboII GAAGA 5 cut(s) 35, 455, 538, 782, 803
MfeI CAATTG 2 cut(s) 32, 555
MflI RGATCY 1 cut(s) 369
MhlI GDGCHC 1 cut(s) 282
MlyI GAGTC 1 cut(s) 398
MnlI CCTC 6 cut(s) 333, 395, 433, 613, 652, 655
MroXI GAANNNNTTC 2 cut(s) 27, 111
MseI TTAA 4 cut(s) 126, 347, 753, 811
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 714
MunI CAATTG 2 cut(s) 32, 555
MvnI CGCG 1 cut(s) 638
MwoI GCNNNNNNNGC 3 cut(s) 171, 292, 755
NciI CCSGG 1 cut(s) 714
NdeII GATC 3 cut(s) 41, 369, 578
NlaIII CATG 7 cut(s) 21, 48, 66, 119, 224, 335, 369
NlaIV GGNNCC 1 cut(s) 371
NspI RCATGY 2 cut(s) 66, 335
PceI AGGCCT 1 cut(s) 174
PdmI GAANNNNTTC 2 cut(s) 27, 111
PfeI GAWTC 3 cut(s) 224, 419, 623
PkrI GCNGC 4 cut(s) 241, 393, 589, 640
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 371
PsuI RGATCY 1 cut(s) 369
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 4 cut(s) 126, 347, 753, 811
SatI GCNGC 4 cut(s) 240, 392, 588, 639
Sau3AI GATC 3 cut(s) 41, 369, 578
SchI GAGTC 1 cut(s) 398
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 1 cut(s) 282
SetI ASST 6 cut(s) 55, 282, 288, 603, 707, 726
SfaNI GCATC 2 cut(s) 22, 736
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 281, 656
SmoI CTYRAG 2 cut(s) 281, 656
SseBI AGGCCT 1 cut(s) 174
SsiI CCGC 3 cut(s) 240, 391, 638
SstI GAGCTC 1 cut(s) 282
StuI AGGCCT 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 548, 595
TaiI ACGT 1 cut(s) 55
TaqI TCGA 4 cut(s) 250, 407, 577, 807
TaqII GACCGA 1 cut(s) 347
TauI GCSGC 3 cut(s) 242, 394, 641
TfiI GAWTC 3 cut(s) 224, 419, 623
Tru1I TTAA 4 cut(s) 126, 347, 753, 811
Tru9I TTAA 4 cut(s) 126, 347, 753, 811
TscAI CASTG 2 cut(s) 589, 790
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 3 cut(s) 104, 237, 354
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 2 cut(s) 589, 790
XapI RAATTY 2 cut(s) 27, 111
XceI RCATGY 2 cut(s) 66, 335
XmnI GAANNNNTTC 2 cut(s) 27, 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.