Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

25431060 .. 25432060

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGAGAGACGGGTAGTTCTTGGACCACCAAGGAAGAAGTTCAATTGTGCGAATCATGGGCTACGGTTACCGTATGTCCCATTACCGGCAATCAACAAACCCTTACAAGGTTGTGGCAAAAGGTTCATGAGCATTATGTTGAAAATTGGATGGGTGCAACCCCGGTTCGACCGCCGGGGGCTCTTCAATCTCATTTCAAGCCTTTGAAGAGGCTTCTCAAAGTGTGGCACAATGCAAAAAATCAAGTAGGGCATCATCGACCAAACGGCACCAATCAATTGGATGAGGAGCATCAAATTAACCTCGAGTATTTGAGGGTGATGAAAAAGCAATTTGAGCATAAGGAGTGTTGGGAGGCGGTGAAGGAACACCCTTATTTTAGAGATGCACTTCAGCCTCCGGTCACTCCCTTTGTTTATTCCACGGCTAACGGTCCTCAAACCGAATCACCAATTAATTTGGATGATGAAGAAATTGTTTTGGAGACTCCTCCTAACTCTGTCGGAAGGCCAATGGGACAAAAGGCCGCCAAAGAAGCAAGAAGGAAAGGAAAAAAGAAAGAAGATGTGGGTGAATCCATGGTTCAAGCCCTACTAGCCATGAACGAGAGCACCAAAATTTCCAATGAGATTCTTAGAAAAAGAGAAGAGGACCGTCATGCCGAAAGTGCAAGAATGATGGCATTTGAAGAGGCAAAAGAGGATGCAAGGATAATGGCCATGCGGAATAGTGATATTTCCTTTGGTTCACAAGATTGGTTCAAAAAATTGAAGAGGGAAATTAGGAGGAAAACCGATCCTAACGCTAATGCGGATTGCTATAGGCCTCTTTTTGAGGAACCACAATCCCCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

286

Amino Acids

32.93

Weight (kDa)

7.16

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	110 - 261	1.3e-09	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	269
AciI	CCGC	5 cut(s)	173, 359, 528, 724, 812
AclWI	GGATC	1 cut(s)	791
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	377
AfiI	CCNNNNNNNGG	2 cut(s)	86, 108
AgsI	TTSAA	9 cut(s)	44, 143, 188, 199, 208, 587, 689, 763, 772
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	2 cut(s)	2, 479
AlwI	GGATC	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	509, 525, 717, 824
ApoI	RAATTY	1 cut(s)	618
AseI	ATTAAT	1 cut(s)	456
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	24, 434, 652
AsuC2I	CCSGG	2 cut(s)	164, 177
AsuHPI	GGTGA	4 cut(s)	331, 373, 441, 584
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	24, 434, 652
BalI	TGGCCA	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	269
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	614
BccI	CCATC	2 cut(s)	145, 673
BceAI	ACGGC	2 cut(s)	283, 441
BcnI	CCSGG	2 cut(s)	164, 177
BcoDI	GTCTC	2 cut(s)	2, 479
BfaI	CTAG	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	820
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	164, 177
Bme18I	GGWCC	3 cut(s)	24, 434, 652
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	24, 434, 652
BmiI	GGNNCC	2 cut(s)	271, 840
BmrFI	CCNGG	2 cut(s)	164, 177
BmsI	GCATC	4 cut(s)	262, 301, 376, 694
BpuMI	CCSGG	2 cut(s)	164, 177
BsaJI	CCNNGG	5 cut(s)	30, 162, 176, 423, 579
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 108
Bse118I	RCCGGY	1 cut(s)	86
BseDI	CCNNGG	5 cut(s)	30, 162, 176, 423, 579
BseGI	GGATG	4 cut(s)	156, 289, 469, 709
BseLI	CCNNNNNNNGG	2 cut(s)	86, 108
BseRI	GAGGAG	2 cut(s)	302, 480
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	4 cut(s)	511, 527, 719, 826
BshNI	GGYRCC	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	614
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	87, 164, 176, 401
BslFI	GGGAC	2 cut(s)	63, 531
BslI	CCNNNNNNNGG	2 cut(s)	86, 108
BsmAI	GTCTC	2 cut(s)	2, 479
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	63, 531
BsnI	GGCC	4 cut(s)	511, 527, 719, 826
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	184, 614
Bsp143I	GATC	1 cut(s)	796
Bsp19I	CCATGG	1 cut(s)	579
BspACI	CCGC	5 cut(s)	173, 359, 528, 724, 812
BspANI	GGCC	4 cut(s)	511, 527, 719, 826
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	271, 840
BspPI	GGATC	1 cut(s)	791
BspQI	GCTCTTC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	5 cut(s)	30, 162, 176, 423, 579
BssMI	GATC	1 cut(s)	796
BssT1I	CCWWGG	2 cut(s)	30, 579
Bst4CI	ACNGT	4 cut(s)	67, 73, 434, 656
Bst6I	CTCTTC	5 cut(s)	189, 203, 642, 684, 767
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	2 cut(s)	423, 579
BstEII	GGTNACC	1 cut(s)	67
BstF5I	GGATG	4 cut(s)	156, 289, 469, 709
BstKTI	GATC	1 cut(s)	799
BstMAI	GTCTC	2 cut(s)	2, 479
BstMBI	GATC	1 cut(s)	796
BstMCI	CGRYCG	1 cut(s)	173
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 536, 596, 668
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	162, 175
BstSFI	CTRYAG	1 cut(s)	820
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	511, 527, 719, 826
BtgI	CCRYGG	2 cut(s)	423, 579
BtsCI	GGATG	4 cut(s)	156, 289, 469, 709
CciI	TCATGA	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	24, 434, 652
CviAII	CATG	6 cut(s)	57, 128, 580, 601, 659, 721
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	5 cut(s)	189, 203, 642, 684, 767
EarI	CTCTTC	5 cut(s)	189, 203, 642, 684, 767
Eco130I	CCWWGG	2 cut(s)	30, 579
Eco147I	AGGCCT	1 cut(s)	826
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	24, 434, 652
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	305
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	30, 579
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	30, 579
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	6 cut(s)	60, 131, 583, 604, 662, 724
FaqI	GGGAC	2 cut(s)	63, 531
FatI	CATG	6 cut(s)	56, 127, 579, 600, 658, 720
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	4 cut(s)	163, 296, 476, 716
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	596
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	4 cut(s)	511, 527, 719, 826
HapII	CCGG	4 cut(s)	87, 164, 176, 401
Hin1II	CATG	6 cut(s)	60, 131, 583, 604, 662, 724
HinfI	GANTC	5 cut(s)	53, 446, 487, 575, 631
HpaII	CCGG	4 cut(s)	87, 164, 176, 401
HphI	GGTGA	4 cut(s)	331, 373, 441, 584
Hpy166II	GTNNAC	1 cut(s)	749
Hpy188I	TCNGA	1 cut(s)	506
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	749
HpyAV	CCTTC	3 cut(s)	358, 501, 537
HpyCH4III	ACNGT	4 cut(s)	67, 73, 434, 656
HpyCH4V	TGCA	5 cut(s)	158, 236, 389, 671, 707
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 536, 596, 668
HpyF3I	CTNAG	1 cut(s)	635
Hsp92II	CATG	6 cut(s)	60, 131, 583, 604, 662, 724
Kzo9I	GATC	1 cut(s)	796
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	4 cut(s)	100, 177, 189, 414
LweI	GCATC	4 cut(s)	262, 301, 376, 694
MaeI	CTAG	1 cut(s)	596
MaeIII	GTNAC	2 cut(s)	67, 403
MalI	GATC	1 cut(s)	798
MboI	GATC	1 cut(s)	796
MboII	GAAGA	8 cut(s)	47, 176, 220, 482, 575, 659, 701, 784
MfeI	CAATTG	2 cut(s)	44, 278
MhlI	GDGCHC	2 cut(s)	184, 614
MlsI	TGGCCA	1 cut(s)	719
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	484
Mox20I	TGGCCA	1 cut(s)	719
MroXI	GAANNNNTTC	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	2 cut(s)	300, 456
Msp20I	TGGCCA	1 cut(s)	719
MspI	CCGG	4 cut(s)	87, 164, 176, 401
MspR9I	CCNGG	2 cut(s)	164, 177
MunI	CAATTG	2 cut(s)	44, 278
MwoI	GCNNNNNNNGC	4 cut(s)	337, 536, 596, 668
NciI	CCSGG	2 cut(s)	164, 177
NcoI	CCATGG	1 cut(s)	579
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	6 cut(s)	60, 131, 583, 604, 662, 724
NlaIV	GGNNCC	2 cut(s)	271, 840
NmuCI	GTSAC	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	4 cut(s)	53, 446, 575, 631
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PshBI	ATTAAT	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	271, 840
PspPI	GGNCC	3 cut(s)	24, 434, 652
PspXI	VCTCGAGB	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	300, 456
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	3 cut(s)	24, 434, 652
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	164, 177
SduI	GDGCHC	2 cut(s)	184, 614
SetI	ASST	3 cut(s)	113, 126, 306
SfaNI	GCATC	4 cut(s)	262, 301, 376, 694
SfcI	CTRYAG	1 cut(s)	820
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	3 cut(s)	24, 434, 652
SlaI	CTCGAG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	5 cut(s)	173, 359, 528, 724, 812
SspMI	CTAG	1 cut(s)	596
StuI	AGGCCT	1 cut(s)	826
StyD4I	CCNGG	2 cut(s)	162, 175
StyI	CCWWGG	2 cut(s)	30, 579
TaaI	ACNGT	4 cut(s)	67, 73, 434, 656
TaqI	TCGA	3 cut(s)	169, 259, 306
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	4 cut(s)	53, 446, 575, 631
Tru1I	TTAA	2 cut(s)	300, 456
Tru9I	TTAA	2 cut(s)	300, 456
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	116, 338, 483, 617
VpaK11BI	GGWCC	3 cut(s)	24, 434, 652
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	618
XhoI	CTCGAG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.