Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

18150163 .. 18151388

Gene Structure 1226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17933

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCAAATTCAAAGTCAGGCACGAAGTGGGCAATTGATGAGGAAGTACAATTATGCAAGTCTTGGGCAACTATTACTTCATGTGGTTCTGTAGGAAAGGATCAAGATGCCAAGCATCTATGGCGTAATATTCATGCTCACTACGAACAAAACTGGGAAGGTGATCCGGACGAAGTTCGATCCCATCAAGCACTCGAAAGTAGGTGGAAAAATTTTAAAAAAAATTTGGCGAGTTGGCATGATGCGGTGAGCAAAGCGGAGCACTATTATGAGAGCGGCTTGAACAACATGGACAAGTTATATCAAACCCACATGTATTACAAGCGTGCAAATAAGGGTAAGGGTTTCACCCATACTCACTGTTGGGAAGTGGTAAAGGATCACCCGAAGTTCAAGGATCCACCAAAAGAGGTGACACAACCTTCACAGATAGTTGATGATTCACCAATTCAGTCAACTGACAACGATGAAGAGTGCATTGCGGAGCCATCTGATGAAAGACCTCCGGGAAGAAAGGCTCAAAAGAGAGATGCTAAGCTCAAAGGGAAGATTAGCGAAAAGCAAGATCGATATATTCAAGCAATGGAAAACATTGCATTTAATAGTGAAGCTAGTAGAGAGGCCACAAGAATCAGAGATGAAGAAAATAGAAAGCACATCGAGTGGCAGCAACAAATGGAAGTGGAAAAGCAACAACTAGAACTACAAAAAGTGCAACTAGAAATCCAAAAGGAGGAAAATTGGGTTATGGCTAAAGACACTAGCATAATGACTCCAGAATCAAAAGCATGGTGGAAGAAAAGAAAGAAAGCTATTCGTGACAAAACCTCAGATGATTGGGAGGGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

283

Amino Acids

33.3

Weight (kDa)

6.61

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	114 - 272	1.8e-13	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	4 cut(s)	245, 257, 276, 482
AclWI	GGATC	6 cut(s)	108, 158, 174, 387, 392, 405
AcsI	RAATTY	3 cut(s)	7, 211, 223
AdeI	CACNNNGTG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	733
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	12, 283, 394, 578
AluBI	AGCT	3 cut(s)	538, 611, 812
AluI	AGCT	3 cut(s)	538, 611, 812
Alw21I	GWGCWC	1 cut(s)	264
AlwI	GGATC	6 cut(s)	108, 158, 174, 387, 392, 405
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	3 cut(s)	7, 211, 223
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AsuC2I	CCSGG	1 cut(s)	507
AsuHPI	GGTGA	6 cut(s)	173, 259, 340, 374, 424, 435
BamHI	GGATCC	1 cut(s)	397
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	2 cut(s)	192, 496
BcnI	CCSGG	1 cut(s)	507
BfaI	CTAG	4 cut(s)	612, 698, 719, 762
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	277, 668
BlpI	GCTNAGC	1 cut(s)	534
BlsI	GCNGC	2 cut(s)	278, 669
Bme1390I	CCNGG	1 cut(s)	507
BmiI	GGNNCC	2 cut(s)	399, 486
BmrFI	CCNGG	1 cut(s)	507
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	4 cut(s)	97, 124, 232, 520
BmuI	ACTGGG	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	759
Bpu1102I	GCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	568
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse1I	ACTGG	1 cut(s)	158
Bse3DI	GCAATG	3 cut(s)	477, 588, 591
BseAI	TCCGGA	1 cut(s)	166
BseCI	ATCGAT	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMI	GCAATG	3 cut(s)	477, 588, 591
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	679
BshFI	GGCC	1 cut(s)	623
BshVI	ATCGAT	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	167, 506
BslI	CCNNNNNNNGG	1 cut(s)	733
BsnI	GGCC	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
Bsp1720I	GCTNAGC	1 cut(s)	534
BspACI	CCGC	4 cut(s)	245, 257, 276, 482
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	842
BspDI	ATCGAT	1 cut(s)	568
BspEI	TCCGGA	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	399, 486
BspPI	GGATC	6 cut(s)	108, 158, 174, 387, 392, 405
BsrBI	CCGCTC	1 cut(s)	276
BsrDI	GCAATG	3 cut(s)	477, 588, 591
BsrI	ACTGG	1 cut(s)	158
BssMI	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	534, 829
BstKTI	GATC	6 cut(s)	103, 166, 182, 382, 400, 568
BstMBI	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	505
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	679
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu15I	ATCGAT	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	623
BsuTUI	ATCGAT	1 cut(s)	568
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	6 cut(s)	81, 134, 239, 289, 313, 789
CviJI	RGCY	8 cut(s)	279, 487, 518, 538, 611, 623, 752, 812
CviKI_1	RGCY	8 cut(s)	279, 487, 518, 538, 611, 623, 752, 812
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	534, 829
DpnI	GATC	6 cut(s)	102, 165, 181, 381, 399, 567
DpnII	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
DraI	TTTAAA	1 cut(s)	217
DraIII	CACNNNGTG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
FaeI	CATG	6 cut(s)	84, 137, 242, 292, 316, 792
FatI	CATG	6 cut(s)	80, 133, 238, 288, 312, 788
Fnu4HI	GCNGC	2 cut(s)	277, 668
Fsp4HI	GCNGC	2 cut(s)	277, 668
FspBI	CTAG	4 cut(s)	612, 698, 719, 762
GluI	GCNGC	2 cut(s)	277, 668
GsuI	CTGGAG	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	2 cut(s)	167, 506
Hin1II	CATG	6 cut(s)	84, 137, 242, 292, 316, 792
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	4 cut(s)	440, 630, 772, 779
HpaII	CCGG	2 cut(s)	167, 506
HphI	GGTGA	6 cut(s)	173, 259, 340, 374, 424, 435
Hpy166II	GTNNAC	1 cut(s)	456
Hpy188I	TCNGA	3 cut(s)	493, 635, 832
Hpy188III	TCNNGA	4 cut(s)	104, 167, 776, 818
Hpy8I	GTNNAC	1 cut(s)	456
HpyAV	CCTTC	2 cut(s)	152, 432
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	5 cut(s)	57, 329, 477, 596, 715
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	534, 829
Hsp92II	CATG	6 cut(s)	84, 137, 242, 292, 316, 792
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
LmnI	GCTCC	2 cut(s)	259, 484
LpnPI	CCDG	5 cut(s)	3, 139, 180, 519, 789
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	4 cut(s)	97, 124, 232, 520
MaeI	CTAG	4 cut(s)	612, 698, 719, 762
MaeIII	GTNAC	2 cut(s)	412, 818
MalI	GATC	6 cut(s)	102, 165, 181, 381, 399, 567
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
MboII	GAAGA	5 cut(s)	482, 522, 559, 653, 808
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	7 cut(s)	7, 33, 50, 211, 223, 447, 739
MlyI	GAGTC	1 cut(s)	766
MnlI	CCTC	7 cut(s)	34, 403, 513, 613, 727, 835, 838
MroI	TCCGGA	1 cut(s)	166
MseI	TTAA	2 cut(s)	216, 600
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	2 cut(s)	167, 506
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	507
NdeII	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
NlaIII	CATG	6 cut(s)	84, 137, 242, 292, 316, 792
NlaIV	GGNNCC	2 cut(s)	399, 486
NmuCI	GTSAC	2 cut(s)	412, 818
NspI	RCATGY	1 cut(s)	316
PciI	ACATGT	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	440, 630, 779
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	278, 669
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PscI	ACATGT	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	399, 486
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	216, 600
SatI	GCNGC	2 cut(s)	277, 668
Sau3AI	GATC	6 cut(s)	100, 163, 179, 379, 397, 565
SchI	GAGTC	1 cut(s)	766
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	163, 206, 414, 424, 505, 540, 613, 814, 830
SfaNI	GCATC	4 cut(s)	97, 124, 232, 520
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	7 cut(s)	7, 33, 50, 211, 223, 447, 739
SsiI	CCGC	4 cut(s)	245, 257, 276, 482
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	4 cut(s)	612, 698, 719, 762
StyD4I	CCNGG	1 cut(s)	505
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	4 cut(s)	178, 195, 568, 660
TasI	AATT	7 cut(s)	7, 33, 50, 211, 223, 447, 739
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	440, 630, 779
Tru1I	TTAA	2 cut(s)	216, 600
Tru9I	TTAA	2 cut(s)	216, 600
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	2 cut(s)	412, 818
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	2 cut(s)	412, 818
TspDTI	ATGAA	5 cut(s)	69, 122, 483, 510, 654
TspRI	CASTG	1 cut(s)	365
XapI	RAATTY	3 cut(s)	7, 211, 223
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	4 cut(s)	612, 698, 719, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.