Rmu_sc0001781.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001781.1
OG0000206
Physical Location & Seq
Reverse (-)
43284 .. 48437
5154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001781.1_g000006.1.cds

Sequence Viewer

Length: 813 bp
atgggatgggtcgaccatgaatatcgatctttaatggattggtttgtgctgaattcaccattttcctcggacgagaatcaatcaaacccaaaggtctctaacacttccttgtgggaaccatggcctcattggctccacaccattgacatgggtgacagtgccgtgcccggctcttccagggctagtgcctcccaaaacgagtctccaatttacttggatgatgatatagttttggagacaccatcaagttccatgtcgagaccaatgggacaaaagagagccaatgaagcaaagaagaaaggaaagaaggcacaacatgcagcagaaaatatggctcttgatattcaagccatgacagaatcaacacaagtttctgttgagctagtgaagaaaagaaacaaagaaatggctactcacacaaggaaggtatttgaatttgaagaggcgaaagaagatgcaagaattatggccacagatgctaattccatgaccccacaaccaaaggcttggtggaaaaagaaaaaaggtgatattgtagtaaaaacaatgtccaataatggtagcaacgatgccgccgacgaagcttctctgacccccggccagactttgaatctcaagcaaaacccgaaaccaaaaacaggttggagttcacccaaaagccagatcgatagagcccatcagacgtcggcgttgccgcttggaaacgaagctgatcaaaatccagtttcgcccaattcgccattgaccttcccagaatcagaacaccctaccatcgtgcttcaaagatgccacaccagacttgccaccgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.05

Weight (kDa)

6.46

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 686
AccI GTMKAC 1 cut(s) 12
AciI CCGC 2 cut(s) 573, 695
AcoI YGGCCR 2 cut(s) 468, 598
AcsI RAATTY 2 cut(s) 52, 434
AcyI GRCGYC 1 cut(s) 683
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 5 cut(s) 347, 434, 440, 610, 782
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 3 cut(s) 382, 584, 710
AluI AGCT 3 cut(s) 382, 584, 710
Alw26I GTCTC 4 cut(s) 100, 207, 230, 253
AoxI GGCC 3 cut(s) 122, 468, 598
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 52, 434
AsuC2I CCSGG 2 cut(s) 168, 597
AsuHPI GGTGA 4 cut(s) 48, 164, 539, 642
BaeGI GKGCMC 1 cut(s) 168
BalI TGGCCA 1 cut(s) 470
BanII GRGCYC 1 cut(s) 676
BbvI GCAGC 1 cut(s) 332
BccI CCATC 3 cut(s) 250, 684, 779
BceAI ACGGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 178
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 2 cut(s) 168, 597
BcoDI GTCTC 4 cut(s) 100, 207, 230, 253
BfaI CTAG 2 cut(s) 183, 383
BglI GCCNNNNNGGC 1 cut(s) 130
BisI GCNGC 3 cut(s) 321, 573, 695
BlsI GCNGC 3 cut(s) 322, 574, 696
Bme1390I CCNGG 3 cut(s) 168, 178, 597
BmiI GGNNCC 2 cut(s) 117, 134
BmrFI CCNGG 3 cut(s) 168, 178, 597
BmsI GCATC 4 cut(s) 445, 466, 559, 776
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 168, 597
Bsa29I ATCGAT 2 cut(s) 25, 666
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 683
BsaI GGTCTC 2 cut(s) 100, 253
BsaJI CCNNGG 4 cut(s) 66, 119, 177, 595
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 1 cut(s) 178
BseCI ATCGAT 2 cut(s) 25, 666
BseDI CCNNGG 4 cut(s) 66, 119, 177, 595
BseGI GGATG 2 cut(s) 11, 223
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 1 cut(s) 638
BseNI ACTGG 1 cut(s) 722
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 1 cut(s) 332
BshFI GGCC 3 cut(s) 124, 470, 600
BshVI ATCGAT 2 cut(s) 25, 666
BsiSI CCGG 2 cut(s) 168, 597
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 4 cut(s) 100, 207, 230, 253
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 3 cut(s) 124, 470, 600
Bso31I GGTCTC 2 cut(s) 100, 253
Bsp1286I GDGCHC 2 cut(s) 168, 676
Bsp143I GATC 3 cut(s) 26, 663, 712
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 573, 695
BspANI GGCC 3 cut(s) 124, 470, 600
BspDI ATCGAT 2 cut(s) 25, 666
BspLI GGNNCC 2 cut(s) 117, 134
BspQI GCTCTTC 1 cut(s) 178
BspTNI GGTCTC 2 cut(s) 100, 253
BsrI ACTGG 1 cut(s) 722
BssECI CCNNGG 4 cut(s) 66, 119, 177, 595
BssMI GATC 3 cut(s) 26, 663, 712
BssNI GRCGYC 1 cut(s) 683
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 158, 808
Bst6I CTCTTC 2 cut(s) 178, 435
BstACI GRCGYC 1 cut(s) 683
BstAPI GCANNNNNTGC 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 11, 223
BstKTI GATC 3 cut(s) 29, 666, 715
BstMAI GTCTC 4 cut(s) 100, 207, 230, 253
BstMBI GATC 3 cut(s) 26, 663, 712
BstMWI GCNNNNNNNGC 6 cut(s) 130, 287, 317, 476, 581, 736
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 320
BstSCI CCNGG 3 cut(s) 166, 176, 595
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 332
BstXI CCANNNNNNTGG 2 cut(s) 148, 507
Bsu15I ATCGAT 2 cut(s) 25, 666
BsuRI GGCC 3 cut(s) 124, 470, 600
BsuTUI ATCGAT 2 cut(s) 25, 666
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 11, 223
BtsIMutI CAGTG 1 cut(s) 163
ClaI ATCGAT 2 cut(s) 25, 666
CviAII CATG 7 cut(s) 17, 120, 148, 253, 317, 352, 487
DpnI GATC 3 cut(s) 28, 665, 714
DpnII GATC 3 cut(s) 26, 663, 712
EaeI YGGCCR 2 cut(s) 468, 598
Eam1104I CTCTTC 2 cut(s) 178, 435
EarI CTCTTC 2 cut(s) 178, 435
Eco130I CCWWGG 1 cut(s) 119
Eco24I GRGCYC 1 cut(s) 676
Eco31I GGTCTC 2 cut(s) 100, 253
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 7 cut(s) 20, 123, 151, 256, 320, 355, 490
FaqI GGGAC 1 cut(s) 282
FatI CATG 7 cut(s) 16, 119, 147, 252, 316, 351, 486
FbaI TGATCA 1 cut(s) 712
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 321, 573, 695
FokI GGATG 2 cut(s) 18, 230
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 3 cut(s) 321, 573, 695
FspBI CTAG 2 cut(s) 183, 383
GluI GCNGC 3 cut(s) 321, 573, 695
HaeIII GGCC 3 cut(s) 124, 470, 600
HapII CCGG 2 cut(s) 168, 597
Hin1I GRCGYC 1 cut(s) 683
Hin1II CATG 7 cut(s) 20, 123, 151, 256, 320, 355, 490
HincII GTYRAC 1 cut(s) 13
HindII GTYRAC 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 5 cut(s) 76, 200, 359, 610, 755
HpaII CCGG 2 cut(s) 168, 597
HphI GGTGA 4 cut(s) 48, 164, 539, 642
Hpy166II GTNNAC 2 cut(s) 13, 650
Hpy188I TCNGA 4 cut(s) 70, 591, 681, 760
Hpy188III TCNNGA 2 cut(s) 258, 338
Hpy8I GTNNAC 2 cut(s) 13, 650
Hpy99I CGWCG 2 cut(s) 581, 688
HpyAV CCTTC 3 cut(s) 301, 418, 757
HpyCH4III ACNGT 2 cut(s) 158, 808
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 2 cut(s) 320, 458
HpyF10VI GCNNNNNNNGC 6 cut(s) 130, 287, 317, 476, 581, 736
HpySE526I ACGT 1 cut(s) 683
Hsp92I GRCGYC 1 cut(s) 683
Hsp92II CATG 7 cut(s) 20, 123, 151, 256, 320, 355, 490
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 3 cut(s) 26, 663, 712
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 332
LweI GCATC 4 cut(s) 445, 466, 559, 776
MaeI CTAG 2 cut(s) 183, 383
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 28, 665, 714
MboI GATC 3 cut(s) 26, 663, 712
MboII GAAGA 5 cut(s) 165, 307, 400, 452, 464
MhlI GDGCHC 2 cut(s) 168, 676
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 6 cut(s) 52, 207, 434, 462, 481, 733
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 623
MnlI CCTC 4 cut(s) 76, 135, 199, 436
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 2 cut(s) 32, 811
MslI CAYNNNNRTG 1 cut(s) 146
Msp20I TGGCCA 1 cut(s) 470
MspI CCGG 2 cut(s) 168, 597
MspR9I CCNGG 3 cut(s) 168, 178, 597
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 6 cut(s) 130, 287, 317, 476, 581, 736
NciI CCSGG 2 cut(s) 168, 597
NcoI CCATGG 1 cut(s) 119
NdeII GATC 3 cut(s) 26, 663, 712
NlaIII CATG 7 cut(s) 20, 123, 151, 256, 320, 355, 490
NlaIV GGNNCC 2 cut(s) 117, 134
NmuCI GTSAC 1 cut(s) 152
NspI RCATGY 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 178
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PfeI GAWTC 4 cut(s) 76, 359, 610, 755
PkrI GCNGC 3 cut(s) 322, 574, 696
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 117, 134
RseI CAYNNNNRTG 1 cut(s) 146
SalI GTCGAC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 32, 811
SatI GCNGC 3 cut(s) 321, 573, 695
Sau3AI GATC 3 cut(s) 26, 663, 712
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 168, 178, 597
SduI GDGCHC 2 cut(s) 168, 676
SetI ASST 9 cut(s) 96, 384, 429, 529, 586, 643, 686, 712, 749
SfaNI GCATC 4 cut(s) 445, 466, 559, 776
SmiMI CAYNNNNRTG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
Sse9I AATT 6 cut(s) 52, 207, 434, 462, 481, 733
SsiI CCGC 2 cut(s) 573, 695
SspMI CTAG 2 cut(s) 183, 383
StyD4I CCNGG 3 cut(s) 166, 176, 595
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 2 cut(s) 158, 808
TaiI ACGT 1 cut(s) 686
TaqI TCGA 4 cut(s) 12, 25, 257, 666
TasI AATT 6 cut(s) 52, 207, 434, 462, 481, 733
TauI GCSGC 2 cut(s) 575, 697
TfiI GAWTC 4 cut(s) 76, 359, 610, 755
Tru1I TTAA 2 cut(s) 32, 811
Tru9I TTAA 2 cut(s) 32, 811
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 33, 300
TspRI CASTG 1 cut(s) 163
XapI RAATTY 2 cut(s) 52, 434
XceI RCATGY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 3 cut(s) 126, 507, 639
XmiI GTMKAC 1 cut(s) 12
XspI CTAG 2 cut(s) 183, 383
ZraI GACGTC 1 cut(s) 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.