Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

15533110 .. 15534050

Gene Structure 941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTGGAAACAAATCCGTGCAGAATTTTCCGAGAGGAGCAATTCGACTCGCACGGAGCAAAGTATTTCTAGCAGGTGGAAAACTCTAAACAAAAAGTTACGCAGCTGGAGAAACGCCTTGGAAAAAGCCCAAGATGATTTTCAAAGTGGCAAAAATCTTACTCATCAGGCACTACAAGCACTCTTGTTGTATAGTGCAGACAACAAGAATAAGTCATTCAAACATCACAATTGTTGGGCCGTTGTGCAGGGATGTCCGAGATTTAAAATTGTTTCCACTTGTCCAACTGTTGTCAAAAACGAGGTGCCACGGCACAATTCACCTAATGGAGACAATTCACCTAATGGAGATTTGCCGTTGGAGTCCCCAGTTGAAAAGGAGTCACCAACTGAAAAAAGGTCGATTCCTGTGGGTAAGAAGGTTTCGAAGAAAAGAGGTAGAAAGGGGGTTTCTTTCAATGAGTGTGCAAGGTTCTTGAAAGAACTTGTTCGCCAAGGTGAAATTAATATTGAGCGGGAGAGGTTAAGAGACGAGGCACTTGCGAGAGAAAGGGAGTATGCACGAAAACAAGATGAGGTACTCCTGAGAGAAAGGATGGACAAGCGAGATCGGGAAATTATGTCCCAGAATCTAAACAATATGTCCTCTGATTCAAAACTGTTTTGGGAACAAGAAAAAGCGGATGTTATGAAAAGAAGGTATGCAAGGGAAGATGGACCTAGCAACACAGAGTTATTCCAAGAGAGTTTATCAGGCAGTGCAGATGTCTACAGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

260

Amino Acids

30.16

Weight (kDa)

9.65

Isoelectric Point (pI)

67.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	768
AciI	CCGC	2 cut(s)	514, 680
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	1 cut(s)	579
AgsI	TTSAA	6 cut(s)	143, 220, 374, 457, 478, 654
AjuI	GAANNNNNNNTTGG	2 cut(s)	123, 155
AluBI	AGCT	1 cut(s)	105
AluI	AGCT	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	324, 522
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	102
ApoI	RAATTY	1 cut(s)	23
AseI	ATTAAT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	237, 716
AsuHPI	GGTGA	4 cut(s)	312, 330, 375, 509
AsuII	TTCGAA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	589, 707
BceAI	ACGGC	3 cut(s)	224, 326, 340
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BcoDI	GTCTC	2 cut(s)	324, 522
BfaI	CTAG	2 cut(s)	69, 720
BfmI	CTRYAG	1 cut(s)	769
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	237, 716
BmiI	GGNNCC	1 cut(s)	306
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BpmI	CTGGAG	1 cut(s)	127
Bpu14I	TTCGAA	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	117, 308, 493
Bse1I	ACTGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	117, 308, 493
BseGI	GGATG	3 cut(s)	257, 600, 688
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	4 cut(s)	39, 216, 266, 780
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	304
BslFI	GGGAC	2 cut(s)	349, 607
BsmAI	GTCTC	2 cut(s)	324, 522
BsmBI	CGTCTC	1 cut(s)	522
BsmFI	GGGAC	2 cut(s)	349, 607
BsnI	GGCC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	2 cut(s)	514, 680
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	576
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	514
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	117, 308, 493
BssMI	GATC	1 cut(s)	607
BssT1I	CCWWGG	2 cut(s)	117, 493
Bst4CI	ACNGT	2 cut(s)	289, 660
BstBI	TTCGAA	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	3 cut(s)	257, 600, 688
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	324, 522
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	769
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	257, 600, 688
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	1 cut(s)	763
BveI	ACCTGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	237, 716
Csp6I	GTAC	1 cut(s)	578
CviJI	RGCY	3 cut(s)	105, 128, 239
CviKI_1	RGCY	3 cut(s)	105, 128, 239
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
DraI	TTTAAA	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	117, 493
Eco47I	GGWCC	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	117, 493
ErhI	CCWWGG	2 cut(s)	117, 493
Esp3I	CGTCTC	1 cut(s)	522
FaiI	YATR	6 cut(s)	192, 558, 620, 641, 689, 702
FaqI	GGGAC	2 cut(s)	349, 607
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	3 cut(s)	264, 607, 695
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	2 cut(s)	69, 720
GluI	GCNGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	239
HinfI	GANTC	6 cut(s)	46, 362, 380, 403, 628, 650
HphI	GGTGA	4 cut(s)	312, 330, 375, 509
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	31, 258, 649
Hpy188III	TCNNGA	3 cut(s)	475, 583, 611
Hpy8I	GTNNAC	1 cut(s)	769
HpyAV	CCTTC	2 cut(s)	412, 690
HpyCH4III	ACNGT	2 cut(s)	289, 660
HpyCH4IV	ACGT	1 cut(s)	776
HpyCH4V	TGCA	7 cut(s)	20, 197, 247, 467, 560, 704, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	1 cut(s)	776
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	2 cut(s)	36, 55
LpnPI	CCDG	9 cut(s)	58, 91, 152, 233, 381, 420, 596, 638, 738
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	69, 720
MaeII	ACGT	1 cut(s)	776
MaeIII	GTNAC	2 cut(s)	96, 381
MalI	GATC	1 cut(s)	609
MbiI	CCGCTC	1 cut(s)	514
MboI	GATC	1 cut(s)	607
MboII	GAAGA	2 cut(s)	439, 722
MfeI	CAATTG	1 cut(s)	229
MluCI	AATT	8 cut(s)	23, 40, 229, 267, 316, 334, 501, 615
MlyI	GAGTC	3 cut(s)	40, 371, 389
MmeI	TCCRAC	2 cut(s)	308, 339
MnlI	CCTC	7 cut(s)	27, 295, 428, 513, 526, 568, 655
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	3 cut(s)	264, 504, 524
MspA1I	CMGCKG	1 cut(s)	105
MunI	CAATTG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	1 cut(s)	607
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	403, 628, 650
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	3 cut(s)	40, 370, 388
PpsI	GAGTC	3 cut(s)	40, 370, 388
PshBI	ATTAAT	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	237, 716
PvuII	CAGCTG	1 cut(s)	105
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	264, 504, 524
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	2 cut(s)	237, 716
SchI	GAGTC	3 cut(s)	40, 371, 389
SfcI	CTRYAG	1 cut(s)	769
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	1 cut(s)	716
Sse9I	AATT	8 cut(s)	23, 40, 229, 267, 316, 334, 501, 615
SsiI	CCGC	2 cut(s)	514, 680
SspI	AATATT	1 cut(s)	508
SspMI	CTAG	2 cut(s)	69, 720
StyI	CCWWGG	2 cut(s)	117, 493
TaaI	ACNGT	2 cut(s)	289, 660
TaiI	ACGT	1 cut(s)	779
TaqI	TCGA	3 cut(s)	44, 401, 425
TasI	AATT	8 cut(s)	23, 40, 229, 267, 316, 334, 501, 615
TfiI	GAWTC	3 cut(s)	403, 628, 650
Tru1I	TTAA	3 cut(s)	264, 504, 524
Tru9I	TTAA	3 cut(s)	264, 504, 524
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	1 cut(s)	704
TspGWI	ACGGA	2 cut(s)	5, 68
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	69, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.