pycom09g03180
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000206
Physical Location & Seq
Reverse (-)
2344538 .. 2345346
809 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03180.2

Sequence Viewer

Length: 591 bp
ATGTTATGTTGTGTGAATGTTGGGTTCGCACTACTCATGACCCGATTACGGGTAATGAGATGGATAAGCGAGAAATGTGGAGTAAAATTACGAAATCGTTTTGCGATGTACATGGAAAAGATGTCCGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGCCCTCTCTCATACTTCTGGTAATCTGCGTAGTAAGTTTAGCGGATGAGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCATAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCGCCAGAAGCAGACACAGCCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATAATGAGGAACTTACTCGTTAAGGTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

197

Amino Acids

22.61

Weight (kDa)

11.03

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 486
AccI GTMKAC 1 cut(s) 384
AciI CCGC 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 451
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 48, 49
AgeI ACCGGT 1 cut(s) 352
AgsI TTSAA 3 cut(s) 145, 294, 436
Alw26I GTCTC 2 cut(s) 235, 463
AoxI GGCC 1 cut(s) 496
AsiGI ACCGGT 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 355
AvaII GGWCC 1 cut(s) 355
AxyI CCTNAGG 1 cut(s) 493
BbsI GAAGAC 2 cut(s) 133, 443
BccI CCATC 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 235, 463
BfaI CTAG 2 cut(s) 131, 332
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmsI GCATC 2 cut(s) 178, 523
BpiI GAAGAC 2 cut(s) 133, 443
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 463
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 49
Bse118I RCCGGY 1 cut(s) 352
Bse21I CCTNAGG 1 cut(s) 493
BseGI GGATG 2 cut(s) 169, 241
BseLI CCNNNNNNNGG 2 cut(s) 48, 49
BseMII CTCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 498
BshTI ACCGGT 1 cut(s) 352
BsiSI CCGG 1 cut(s) 353
BslFI GGGAC 2 cut(s) 462, 474
BslI CCNNNNNNNGG 2 cut(s) 48, 49
BsmAI GTCTC 2 cut(s) 235, 463
BsmFI GGGAC 2 cut(s) 462, 474
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 233
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 506
BspHI TCATGA 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 352
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 451
Bst4CI ACNGT 2 cut(s) 376, 391
BstACI GRCGYC 1 cut(s) 451
BstAUI TGTACA 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 493
BstF5I GGATG 2 cut(s) 169, 241
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 235, 463
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 133, 443
Bsu36I CCTNAGG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 498
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 169, 241
CciI TCATGA 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 355
CseI GACGC 1 cut(s) 459
Csp6I GTAC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 352
CviAII CATG 3 cut(s) 37, 112, 369
CviJI RGCY 3 cut(s) 412, 424, 498
CviKI_1 RGCY 3 cut(s) 412, 424, 498
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 493
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 493
FaeI CATG 3 cut(s) 40, 115, 372
FaiI YATR 8 cut(s) 7, 38, 113, 203, 281, 370, 379, 560
FaqI GGGAC 2 cut(s) 462, 474
FatI CATG 3 cut(s) 36, 111, 368
FblI GTMKAC 1 cut(s) 384
FokI GGATG 2 cut(s) 156, 248
FspBI CTAG 2 cut(s) 131, 332
HaeIII GGCC 1 cut(s) 498
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 459
Hin1I GRCGYC 1 cut(s) 451
Hin1II CATG 3 cut(s) 40, 115, 372
HinfI GANTC 1 cut(s) 480
HpaII CCGG 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 385, 586
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 2 cut(s) 37, 358
Hpy8I GTNNAC 2 cut(s) 385, 586
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 2 cut(s) 376, 391
HpyCH4V TGCA 2 cut(s) 271, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 451
Hsp92II CATG 3 cut(s) 40, 115, 372
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 194, 366, 371, 410, 467, 479, 480
LweI GCATC 2 cut(s) 178, 523
MaeI CTAG 2 cut(s) 131, 332
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 133, 448, 527
MluCI AATT 3 cut(s) 86, 314, 341
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 2 cut(s) 133, 163
MnlI CCTC 4 cut(s) 205, 502, 509, 558
MseI TTAA 1 cut(s) 579
MspI CCGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 40, 115, 372
PagI TCATGA 1 cut(s) 36
PceI AGGCCT 1 cut(s) 498
PctI GAATGC 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 352
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PspPI GGNCC 1 cut(s) 355
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 579
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 1 cut(s) 474
SetI ASST 5 cut(s) 141, 150, 507, 531, 585
SfaNI GCATC 2 cut(s) 178, 523
SinI GGWCC 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 3 cut(s) 86, 314, 341
SseBI AGGCCT 1 cut(s) 498
SsiI CCGC 1 cut(s) 233
SspMI CTAG 2 cut(s) 131, 332
StuI AGGCCT 1 cut(s) 498
TaaI ACNGT 2 cut(s) 376, 391
TasI AATT 3 cut(s) 86, 314, 341
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TspGWI ACGGA 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 131, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.