Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

950755 .. 951694

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTAGTTCTTGGACCACCGAGGAGGAAGTTCAATTGTGCAAGTCATGGACTACGGTTACCGTATGCCCCATAACCGGCAATCAACAAACACTTACAAGGTTGTGGGAAAAGGTTCATGAACATTATGTTGAAAATTGGACGAGATCAACCGTGGTGCGACCGCCGGCGGCTCTTCAAGCTCATTTCAAGCCTTTGAAGAGACTTCTCAAAGCATGGCACAATGCAAAAATTAAAGTTGGGAATCATAGACCAAGCGGCACCAATCAATTGGATGAGGATCATCAAATTAACCTAGAGTTTATAAGAGTGATTAATAAGCAATTCGAGCATAAGGATTGTTGGGAGGCGGTGAAGGATCACCCTTATTTTAGAGATGCACCTACGTCTCCGGTTGCCCCGTTTGTTTACTCCACGGCTAGCGGTCCACAAACCGAATCACCAATTAATTTGGATGATGAAGAAATTATTTTGGAGACTCCTTCTAGCTCAATCGGAAGGCCACTAGGACAAAAAGCCGCCAAAGAAGCAAGAAGGAAAGGAAAAAAGAAAGAAGATGTGGGTGAATCCATGGTTCAAGCCATACTAGCCATGAACGAGAGCAACAAAATTTCCAACGAGATTCTTAAAAAAAGAGAAGAGGACCGTTGTGCCAAAAGTGCAAGAATGATGGCATTTGAAGAGGCAAAAGAGGATGCAAGGATAATGGCCATGAGAAGTAGTGACATTTCCCCGGGTTCACAAGATTGGTTCAAAAATTTGAAGAGGAACATTAGGAGGAAAACCGATCCTAATGCTAATGCGGATTGCTATAGGCCTCTTTTTGAGGAACCGCAATCCCCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

283

Amino Acids

32.3

Weight (kDa)

8.5

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	107 - 258	4.7e-11	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	8 cut(s)	164, 170, 258, 350, 423, 519, 803, 833
AclWI	GGATC	3 cut(s)	288, 366, 782
AcoI	YGGCCR	1 cut(s)	708
AcsI	RAATTY	2 cut(s)	609, 757
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	9 cut(s)	35, 134, 179, 190, 199, 578, 680, 754, 763
AluBI	AGCT	2 cut(s)	182, 489
AluI	AGCT	2 cut(s)	182, 489
Alw26I	GTCTC	3 cut(s)	196, 393, 470
AlwI	GGATC	3 cut(s)	288, 366, 782
Ama87I	CYCGRG	1 cut(s)	733
AoxI	GGCC	3 cut(s)	500, 708, 815
ApoI	RAATTY	2 cut(s)	609, 757
AseI	ATTAAT	2 cut(s)	315, 447
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	3 cut(s)	15, 425, 643
AsuC2I	CCSGG	2 cut(s)	734, 735
AsuHPI	GGTGA	4 cut(s)	353, 364, 432, 575
AsuNHI	GCTAGC	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	15, 425, 643
BalI	TGGCCA	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	260
BccI	CCATC	1 cut(s)	664
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	776, 810
BcnI	CCSGG	2 cut(s)	734, 735
BcoDI	GTCTC	3 cut(s)	196, 393, 470
BfaI	CTAG	5 cut(s)	296, 420, 486, 506, 587
BfmI	CTRYAG	1 cut(s)	811
BisI	GCNGC	3 cut(s)	171, 259, 519
BlsI	GCNGC	3 cut(s)	172, 260, 520
Bme1390I	CCNGG	2 cut(s)	734, 735
Bme18I	GGWCC	3 cut(s)	15, 425, 643
BmeT110I	CYCGRG	1 cut(s)	733
BmgT120I	GGNCC	3 cut(s)	15, 425, 643
BmiI	GGNNCC	2 cut(s)	262, 831
BmrFI	CCNGG	2 cut(s)	734, 735
BmsI	GCATC	2 cut(s)	367, 685
BmtI	GCTAGC	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	734, 735
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	6 cut(s)	21, 153, 414, 570, 732, 733
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	2 cut(s)	77, 166
Bse8I	GATNNNNATC	1 cut(s)	279
BseDI	CCNNGG	6 cut(s)	21, 153, 414, 570, 732, 733
BseGI	GGATG	3 cut(s)	280, 460, 700
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	3 cut(s)	502, 710, 817
BshNI	GGYRCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	4 cut(s)	78, 167, 392, 734
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	3 cut(s)	196, 393, 470
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	502, 710, 817
BsoBI	CYCGRG	1 cut(s)	733
Bsp143I	GATC	4 cut(s)	146, 280, 358, 787
Bsp19I	CCATGG	1 cut(s)	570
BspACI	CCGC	8 cut(s)	164, 170, 258, 350, 423, 519, 803, 833
BspANI	GGCC	3 cut(s)	502, 710, 817
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	262, 831
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	3 cut(s)	288, 366, 782
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	2 cut(s)	77, 166
BssAI	RCCGGY	2 cut(s)	77, 166
BssECI	CCNNGG	6 cut(s)	21, 153, 414, 570, 732, 733
BssMI	GATC	4 cut(s)	146, 280, 358, 787
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	4 cut(s)	58, 64, 154, 647
Bst6I	CTCTTC	5 cut(s)	180, 194, 633, 675, 758
BstC8I	GCNNGC	2 cut(s)	168, 421
BstDSI	CCRYGG	3 cut(s)	153, 414, 570
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	3 cut(s)	280, 460, 700
BstKTI	GATC	4 cut(s)	149, 283, 361, 790
BstMAI	GTCTC	3 cut(s)	196, 393, 470
BstMBI	GATC	4 cut(s)	146, 280, 358, 787
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 328, 527, 587, 659
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	732, 733
BstSFI	CTRYAG	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	502, 710, 817
BtgI	CCRYGG	3 cut(s)	153, 414, 570
BtsCI	GGATG	3 cut(s)	280, 460, 700
Cac8I	GCNNGC	2 cut(s)	168, 421
CciI	TCATGA	1 cut(s)	118
Cfr10I	RCCGGY	2 cut(s)	77, 166
Cfr13I	GGNCC	3 cut(s)	15, 425, 643
Cfr9I	CCCGGG	1 cut(s)	733
CviAII	CATG	6 cut(s)	48, 119, 216, 571, 592, 712
DpnI	GATC	4 cut(s)	148, 282, 360, 789
DpnII	GATC	4 cut(s)	146, 280, 358, 787
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	5 cut(s)	180, 194, 633, 675, 758
EarI	CTCTTC	5 cut(s)	180, 194, 633, 675, 758
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	817
Eco47I	GGWCC	3 cut(s)	15, 425, 643
Eco88I	CYCGRG	1 cut(s)	733
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	6 cut(s)	51, 122, 219, 574, 595, 715
FatI	CATG	6 cut(s)	47, 118, 215, 570, 591, 711
Fnu4HI	GCNGC	3 cut(s)	171, 259, 519
FokI	GGATG	3 cut(s)	287, 467, 707
Fsp4HI	GCNGC	3 cut(s)	171, 259, 519
FspBI	CTAG	5 cut(s)	296, 420, 486, 506, 587
GluI	GCNGC	3 cut(s)	171, 259, 519
HaeIII	GGCC	3 cut(s)	502, 710, 817
HapII	CCGG	4 cut(s)	78, 167, 392, 734
Hin1II	CATG	6 cut(s)	51, 122, 219, 574, 595, 715
HinfI	GANTC	5 cut(s)	244, 437, 478, 566, 622
HpaII	CCGG	4 cut(s)	78, 167, 392, 734
HphI	GGTGA	4 cut(s)	353, 364, 432, 575
Hpy166II	GTNNAC	3 cut(s)	409, 428, 740
Hpy188I	TCNGA	1 cut(s)	497
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	3 cut(s)	409, 428, 740
HpyAV	CCTTC	4 cut(s)	349, 492, 492, 528
HpyCH4III	ACNGT	4 cut(s)	58, 64, 154, 647
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	5 cut(s)	42, 227, 380, 662, 698
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 328, 527, 587, 659
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	6 cut(s)	51, 122, 219, 574, 595, 715
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	146, 280, 358, 787
LguI	GCTCTTC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	91, 180, 405, 747
LweI	GCATC	2 cut(s)	367, 685
MaeI	CTAG	5 cut(s)	296, 420, 486, 506, 587
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	58, 722
MalI	GATC	4 cut(s)	148, 282, 360, 789
MboI	GATC	4 cut(s)	146, 280, 358, 787
MboII	GAAGA	7 cut(s)	167, 211, 473, 566, 650, 692, 775
MfeI	CAATTG	2 cut(s)	35, 269
MlsI	TGGCCA	1 cut(s)	710
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	1 cut(s)	710
MreI	CGCCGGCG	1 cut(s)	166
MroNI	GCCGGC	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	5 cut(s)	234, 291, 315, 447, 627
Msp20I	TGGCCA	1 cut(s)	710
MspI	CCGG	4 cut(s)	78, 167, 392, 734
MspR9I	CCNGG	2 cut(s)	734, 735
MunI	CAATTG	2 cut(s)	35, 269
MwoI	GCNNNNNNNGC	5 cut(s)	179, 328, 527, 587, 659
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	2 cut(s)	734, 735
NcoI	CCATGG	1 cut(s)	570
NdeII	GATC	4 cut(s)	146, 280, 358, 787
NgoMIV	GCCGGC	1 cut(s)	166
NheI	GCTAGC	1 cut(s)	419
NlaIII	CATG	6 cut(s)	51, 122, 219, 574, 595, 715
NlaIV	GGNNCC	2 cut(s)	262, 831
NmuCI	GTSAC	1 cut(s)	722
PagI	TCATGA	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	817
PciSI	GCTCTTC	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	4 cut(s)	244, 437, 566, 622
PkrI	GCNGC	3 cut(s)	172, 260, 520
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PshBI	ATTAAT	2 cut(s)	315, 447
PsiI	TTATAA	1 cut(s)	305
PspEI	GGTNACC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	262, 831
PspPI	GGNCC	3 cut(s)	15, 425, 643
SapI	GCTCTTC	1 cut(s)	180
SaqAI	TTAA	5 cut(s)	234, 291, 315, 447, 627
SatI	GCNGC	3 cut(s)	171, 259, 519
Sau3AI	GATC	4 cut(s)	146, 280, 358, 787
Sau96I	GGNCC	3 cut(s)	15, 425, 643
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	734, 735
SetI	ASST	7 cut(s)	104, 117, 184, 297, 385, 389, 491
SfaNI	GCATC	2 cut(s)	367, 685
SfcI	CTRYAG	1 cut(s)	811
SgrAI	CRCCGGYG	1 cut(s)	166
SinI	GGWCC	3 cut(s)	15, 425, 643
SmaI	CCCGGG	1 cut(s)	735
SseBI	AGGCCT	1 cut(s)	817
SsiI	CCGC	8 cut(s)	164, 170, 258, 350, 423, 519, 803, 833
SspMI	CTAG	5 cut(s)	296, 420, 486, 506, 587
StuI	AGGCCT	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	732, 733
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	4 cut(s)	58, 64, 154, 647
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	1 cut(s)	327
TauI	GCSGC	3 cut(s)	173, 261, 521
TfiI	GAWTC	4 cut(s)	244, 437, 566, 622
Tru1I	TTAA	5 cut(s)	234, 291, 315, 447, 627
Tru9I	TTAA	5 cut(s)	234, 291, 315, 447, 627
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	4 cut(s)	107, 135, 474, 608
TspMI	CCCGGG	1 cut(s)	733
VpaK11BI	GGWCC	3 cut(s)	15, 425, 643
VspI	ATTAAT	2 cut(s)	315, 447
XapI	RAATTY	2 cut(s)	609, 757
XmaI	CCCGGG	1 cut(s)	733
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	5 cut(s)	296, 420, 486, 506, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.