FvH4_7g29320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000206
Physical Location & Seq
Forward (+)
21600507 .. 21601034
528 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29320.t1

Sequence Viewer

Length: 528 bp
ATGAGTACTCCTTCTCCGTTTGTGCGGAATTTTCCAATTTCTCCCGAGCTCCATGACACGGATGGGCATGTTGACTTGGATGATGATGAAGGATTCACAACTCCGCCGTCCAACCAAGAGAGACCTCGTCCCTCAAGCCCGGTTAGGCCTATGGGAGTAAAGGCGGCCAAGGAAGCAAAGAAGAAGGGAAAAAAAGGTATGGCGGAGAAAGACGAGAAGTCTTTATCTATTTTTCATAATATGCAATGTAATCAAAAAGCACTTATGGAGGCTAACATGCGAAGAAACGAGAAAACCCTTCGGTTGGCTAGGGAGAGCTTAGAACTTGAGAAACGAAAGGAAGCAAGGTTGGCCCAACGTGATGTTATGGCGGAGTTGCAAGAAGAAACCAAAATTATGACAATGGATACAAGCATCATGACCCCGAAAAGTTTGAAGTGGCACAAAAAGAGGAAATCGGATATCATGGCAAAAATGAATGAGAGTACTAGTGATGATTATTATGTTCCCCTCTTTGATGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.16

Weight (kDa)

7.81

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 27 - 155 5.9e-09 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 25, 104, 164, 203, 371
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 2 cut(s) 7, 487
AfiI CCNNNNNNNGG 2 cut(s) 58, 304
AgsI TTSAA 1 cut(s) 436
AhdI GACNNNNNGTC 1 cut(s) 217
AhlI ACTAGT 1 cut(s) 488
AluBI AGCT 2 cut(s) 49, 318
AluI AGCT 2 cut(s) 49, 318
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 146, 165, 351
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 91
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 115
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 309, 489
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 2 cut(s) 7, 487
Bme1390I CCNGG 1 cut(s) 140
BmeRI GACNNNNNGTC 1 cut(s) 217
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 118, 347
BpuMI CCSGG 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 304
Bse3DI GCAATG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 67, 85
BseLI CCNNNNNNNGG 2 cut(s) 58, 304
BseMI GCAATG 1 cut(s) 251
BshFI GGCC 3 cut(s) 148, 167, 353
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 58, 304
BsmAI GTCTC 1 cut(s) 115
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 3 cut(s) 148, 167, 353
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 51
BspACI CCGC 5 cut(s) 25, 104, 164, 203, 371
BspANI GGCC 3 cut(s) 148, 167, 353
BspHI TCATGA 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 319
BstF5I GGATG 2 cut(s) 67, 85
BstMAI GTCTC 1 cut(s) 115
BstMWI GCNNNNNNNGC 2 cut(s) 173, 350
BstNSI RCATGY 2 cut(s) 71, 280
BstSCI CCNGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 3 cut(s) 148, 167, 353
BtsCI GGATG 2 cut(s) 67, 85
CciI TCATGA 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 6, 486
CviAII CATG 5 cut(s) 53, 68, 277, 418, 466
CviJI RGCY 8 cut(s) 49, 138, 148, 167, 272, 308, 318, 353
CviKI_1 RGCY 8 cut(s) 49, 138, 148, 167, 272, 308, 318, 353
CviQI GTAC 2 cut(s) 6, 486
DdeI CTNAG 1 cut(s) 319
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 165
Eam1105I GACNNNNNGTC 1 cut(s) 217
EciI GGCGGA 3 cut(s) 93, 218, 386
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 168
Eco147I AGGCCT 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 463
Eco53kI GAGCTC 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 49
EcoRV GATATC 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 5 cut(s) 56, 71, 280, 421, 469
FaqI GGGAC 1 cut(s) 114
FatI CATG 5 cut(s) 52, 67, 276, 417, 465
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 2 cut(s) 74, 92
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 2 cut(s) 309, 489
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 3 cut(s) 148, 167, 353
HapII CCGG 1 cut(s) 140
Hin1II CATG 5 cut(s) 56, 71, 280, 421, 469
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 1 cut(s) 93
HpaII CCGG 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 44, 418
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 21, 83, 178, 308
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 2 cut(s) 244, 379
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 350
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 5 cut(s) 56, 71, 280, 421, 469
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 1 cut(s) 153
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 309, 489
MaeII ACGT 1 cut(s) 358
MboII GAAGA 3 cut(s) 193, 294, 395
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 28, 36, 393
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 135, 142, 262, 444, 521
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 173, 350
NciI CCSGG 1 cut(s) 140
NlaIII CATG 5 cut(s) 56, 71, 280, 421, 469
NspI RCATGY 2 cut(s) 71, 280
PagI TCATGA 1 cut(s) 417
PceI AGGCCT 1 cut(s) 148
PfeI GAWTC 1 cut(s) 93
PflFI GACNNNGTC 1 cut(s) 126
PkrI GCNGC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 126
RsaI GTAC 2 cut(s) 7, 487
RsaNI GTAC 2 cut(s) 6, 486
SacI GAGCTC 1 cut(s) 51
SatI GCNGC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 2 cut(s) 7, 487
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 51
SetI ASST 6 cut(s) 51, 127, 199, 320, 350, 361
SfaNI GCATC 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 133, 326
SmoI CTYRAG 2 cut(s) 133, 326
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 3 cut(s) 28, 36, 393
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 5 cut(s) 25, 104, 164, 203, 371
SspMI CTAG 2 cut(s) 309, 489
SstI GAGCTC 1 cut(s) 51
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 361
TasI AATT 3 cut(s) 28, 36, 393
TatI WGTACW 2 cut(s) 5, 485
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 93
TspDTI ATGAA 3 cut(s) 102, 224, 491
TspGWI ACGGA 2 cut(s) 6, 74
Tth111I GACNNNGTC 1 cut(s) 126
XapI RAATTY 1 cut(s) 28
XceI RCATGY 2 cut(s) 71, 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XspI CTAG 2 cut(s) 309, 489
ZrmI AGTACT 2 cut(s) 7, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.