Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

6507591 .. 6508532

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTATCTTGAGAAATTTGGTGGGCAAAGAACCAAAGAATCAATGTCCAGTTGTTGGAAATTACTTAGCCAATCGTTTAGTACGTGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAACTACTCGGATCAGGAACTTCAAGTACAAGTTTGGTATGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCAGTGGGAATGTTGGAATATTGTCAAAGATTGTCCTAAATTTAGAGTTGTGCCAGTTGGTCCAGAAGTGCACATGAACAGCACCCATCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCCGAAACGCCCCTCCCTGAACAAGCGTCGGGTTCGACCCGTTATCCAATTAGGCCTCAAGGTAAGAAGGCTTCAAAGAGAAAAAGGAGTGCTTCCAAGAATGATTACGCAAAGTTCATGAAAGAACTTACTCGCCAAGGTGAATTGACTTTGGCGAGGGAACTGGCGAAATATGAGGCTGATAAGGCTAGAGAGGATGCAAAAGCAGTAGCTATTGAGAGAGAATTTCATGCTAATGAGAGAGAAAGAGAGCTACTTAGGCAAGAAAGGGAACATGTTAGAGAAGAAAGACGGGCTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

227

Amino Acids

26.43

Weight (kDa)

8.87

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	90
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	50, 281, 602
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	118, 195
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	3 cut(s)	191, 241, 453
AluBI	AGCT	3 cut(s)	143, 590, 631
AluI	AGCT	3 cut(s)	143, 590, 631
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	3 cut(s)	50, 281, 602
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	530
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	315, 381
BanII	GRGCYC	1 cut(s)	676
BarI	GAAGNNNNNNTAC	2 cut(s)	433, 465
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	144, 567
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmsI	GCATC	2 cut(s)	355, 565
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	2 cut(s)	65, 420
BsaAI	YACGTR	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	132, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	4 cut(s)	84, 244, 296, 546
BseDI	CCNNGG	2 cut(s)	132, 514
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseNI	ACTGG	4 cut(s)	84, 244, 296, 546
BseSI	GKGCMC	2 cut(s)	315, 381
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	1 cut(s)	120
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	3 cut(s)	315, 381, 676
Bsp143I	GATC	2 cut(s)	178, 346
BspANI	GGCC	1 cut(s)	433
BspHI	TCATGA	2 cut(s)	355, 495
BspPI	GGATC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	157
BsrI	ACTGG	4 cut(s)	84, 244, 296, 546
BssECI	CCNNGG	2 cut(s)	132, 514
BssMI	GATC	2 cut(s)	178, 346
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	132, 514
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	120
BstBI	TTCGAA	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	101, 635
BstF5I	GGATG	1 cut(s)	580
BstKTI	GATC	2 cut(s)	181, 349
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	178, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 563, 637
BstNSI	RCATGY	1 cut(s)	656
BstSLI	GKGCMC	2 cut(s)	315, 381
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	433
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	251
CciI	TCATGA	2 cut(s)	355, 495
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	2 cut(s)	137, 393
Csp6I	GTAC	2 cut(s)	117, 194
CviAII	CATG	6 cut(s)	316, 350, 356, 496, 608, 653
CviJI	RGCY	9 cut(s)	105, 143, 433, 449, 557, 566, 590, 631, 674
CviKI_1	RGCY	9 cut(s)	105, 143, 433, 449, 557, 566, 590, 631, 674
CviQI	GTAC	2 cut(s)	117, 194
DdeI	CTNAG	2 cut(s)	101, 635
DpnI	GATC	2 cut(s)	180, 348
DpnII	GATC	2 cut(s)	178, 346
Eco130I	CCWWGG	2 cut(s)	132, 514
Eco147I	AGGCCT	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	132, 514
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	2 cut(s)	132, 514
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	6 cut(s)	319, 353, 359, 499, 611, 656
FaiI	YATR	9 cut(s)	33, 207, 317, 351, 357, 497, 552, 609, 654
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FatI	CATG	6 cut(s)	315, 349, 355, 495, 607, 652
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	144, 567
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	433
HgaI	GACGC	2 cut(s)	137, 393
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	6 cut(s)	319, 353, 359, 499, 611, 656
HinfI	GANTC	2 cut(s)	22, 74
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	5 cut(s)	44, 182, 305, 356, 496
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	409
HpyAV	CCTTC	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	4, 313, 368, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 563, 637
HpyF3I	CTNAG	2 cut(s)	101, 635
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	6 cut(s)	319, 353, 359, 499, 611, 656
Kzo9I	GATC	2 cut(s)	178, 346
LpnPI	CCDG	7 cut(s)	97, 167, 257, 309, 318, 408, 527
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	355, 565
MaeI	CTAG	2 cut(s)	144, 567
MaeII	ACGT	1 cut(s)	119
MalI	GATC	2 cut(s)	180, 348
MboI	GATC	2 cut(s)	178, 346
MboII	GAAGA	3 cut(s)	371, 383, 674
MhlI	GDGCHC	3 cut(s)	315, 381, 676
MluCI	AATT	7 cut(s)	37, 50, 95, 281, 426, 521, 602
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	2 cut(s)	71, 236
MnlI	CCTC	5 cut(s)	401, 444, 528, 547, 565
MslI	CAYNNNNRTG	3 cut(s)	354, 360, 612
MwoI	GCNNNNNNNGC	3 cut(s)	385, 563, 637
NdeII	GATC	2 cut(s)	178, 346
NlaIII	CATG	6 cut(s)	319, 353, 359, 499, 611, 656
NspI	RCATGY	1 cut(s)	656
NspV	TTCGAA	1 cut(s)	157
PagI	TCATGA	2 cut(s)	355, 495
PceI	AGGCCT	1 cut(s)	433
PciI	ACATGT	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	120
PscI	ACATGT	1 cut(s)	652
PspPI	GGNCC	1 cut(s)	302
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
RsaI	GTAC	2 cut(s)	118, 195
RsaNI	GTAC	2 cut(s)	117, 194
RseI	CAYNNNNRTG	3 cut(s)	354, 360, 612
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	2 cut(s)	178, 346
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	3 cut(s)	315, 381, 676
SetI	ASST	6 cut(s)	122, 145, 442, 520, 592, 633
SfaNI	GCATC	2 cut(s)	355, 565
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	3 cut(s)	354, 360, 612
SmlI	CTYRAG	2 cut(s)	44, 435
SmoI	CTYRAG	2 cut(s)	44, 435
Sse9I	AATT	7 cut(s)	37, 50, 95, 281, 426, 521, 602
SseBI	AGGCCT	1 cut(s)	433
SspI	AATATT	2 cut(s)	154, 262
SspMI	CTAG	2 cut(s)	144, 567
StuI	AGGCCT	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	132, 514
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	157, 413
TasI	AATT	7 cut(s)	37, 50, 95, 281, 426, 521, 602
TatI	WGTACW	1 cut(s)	193
TfiI	GAWTC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	251
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	7 cut(s)	20, 332, 344, 372, 484, 512, 596
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	3 cut(s)	50, 281, 602
XceI	RCATGY	1 cut(s)	656
XspI	CTAG	2 cut(s)	144, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.