Rw5G043680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000206
Physical Location & Seq
Reverse (-)
76608456 .. 76609351
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043680.1

Sequence Viewer

Length: 669 bp
ATGAAGAAGCTCAATTGTGTAGGTCATGCATGGGTACGTTTTACTACATGCTCCATCACGGGAAATCGTCAATCAAAGAACAACTTATGGGAAAAAATTCATGCCGACTTCACGGAAAATTGGCAACGAAATCCCCTCTATCCTCGAAGCCAACAAGGTCTACAATCCCATTGGCGCAATTTGAAGGCGGTACTTAAAGTTTGGCATAAATGTTTGCAAAAAGTTTCACACAACCAACGAAGTGGTGAGAATCAAATGGATGAGAACCCTCCCCGGCCGACATTTAGCTCTGAAGAGATGGATTCCACCACTAACTTGGGTGAGGATGAAGTTTTGGAGACACCACCGAGTCCATCTGCAAGGCCTCCTAGGATAAAGGCTTCAAAAGAAGCAATAAGGAAAGGGAAGAAGAAGCAAGAGAAAGACAATCGTGTAGCAATTGCAGTTGAAAGTCTTGCTCGATCCACCGCTGCTACAGTTAAGCTAATTAGGCAAAGAGATGAGAATGCTCTAAAGCACGGAGCAAGAAATTATGTCTACGATACTTCTGCAATGACTCCGGAATCAAAGCAATGGTGGAAAAGAAGGAAGGCTGTGATTAAAGCAAAAACAAGAGATGATGTTGATAATAGTGTTGAAGACACCCAATGGTTCGAAGACACCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.71

Weight (kDa)

9.7

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 160, 537
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 2 cut(s) 188, 468
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 2 cut(s) 36, 192
AgsI TTSAA 4 cut(s) 184, 384, 449, 638
AluBI AGCT 3 cut(s) 10, 288, 484
AluI AGCT 3 cut(s) 10, 288, 484
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 2 cut(s) 275, 362
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 368
AspLEI GCGC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 257, 332
AsuII TTCGAA 1 cut(s) 654
AvrII CCTAGG 1 cut(s) 368
BbsI GAAGAC 2 cut(s) 645, 663
BbvI GCAGC 1 cut(s) 457
BccI CCATC 3 cut(s) 62, 292, 361
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 474
BisI GCNGC 1 cut(s) 471
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 274
BpiI GAAGAC 2 cut(s) 645, 663
Bpu14I TTCGAA 1 cut(s) 654
BpuMI CCSGG 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 272, 368
BsaWI WCCGGW 1 cut(s) 559
Bse3DI GCAATG 2 cut(s) 558, 578
BseAI TCCGGA 1 cut(s) 559
BseDI CCNNGG 2 cut(s) 272, 368
BseGI GGATG 2 cut(s) 265, 331
BseMI GCAATG 2 cut(s) 558, 578
BseX3I CGGCCG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 457
Bsh1285I CGRYCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 277, 364
BsiEI CGRYCG 1 cut(s) 278
BsiSI CCGG 2 cut(s) 274, 560
BsmAI GTCTC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 511
BsnI GGCC 2 cut(s) 277, 364
Bsp119I TTCGAA 1 cut(s) 654
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 1 cut(s) 461
BspACI CCGC 2 cut(s) 188, 468
BspANI GGCC 2 cut(s) 277, 364
BspEI TCCGGA 1 cut(s) 559
BspPI GGATC 1 cut(s) 456
BspT104I TTCGAA 1 cut(s) 654
BsrDI GCAATG 2 cut(s) 558, 578
BssECI CCNNGG 2 cut(s) 272, 368
BssMI GATC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 288
BstBI TTCGAA 1 cut(s) 654
BstF5I GGATG 2 cut(s) 265, 331
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 1 cut(s) 464
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 1 cut(s) 461
BstMCI CGRYCG 1 cut(s) 278
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 457
BstV2I GAAGAC 2 cut(s) 645, 663
BstXI CCANNNNNNTGG 2 cut(s) 242, 316
BstZI CGGCCG 1 cut(s) 275
BsuRI GGCC 2 cut(s) 277, 364
BtsCI GGATG 2 cut(s) 265, 331
CfoI GCGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 35, 191
CviAII CATG 5 cut(s) 26, 30, 48, 101, 666
CviJI RGCY 8 cut(s) 10, 150, 277, 288, 364, 380, 484, 593
CviKI_1 RGCY 8 cut(s) 10, 150, 277, 288, 364, 380, 484, 593
CviQI GTAC 2 cut(s) 35, 191
DpnI GATC 1 cut(s) 463
DpnII GATC 1 cut(s) 461
EaeI YGGCCR 1 cut(s) 275
EagI CGGCCG 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EclXI CGGCCG 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 1 cut(s) 364
Eco52I CGGCCG 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 5 cut(s) 29, 33, 51, 104, 669
FaiI YATR 8 cut(s) 27, 31, 49, 88, 102, 207, 534, 667
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 5 cut(s) 25, 29, 47, 100, 665
FblI GTMKAC 2 cut(s) 160, 537
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 2 cut(s) 272, 338
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 2 cut(s) 277, 364
HapII CCGG 2 cut(s) 274, 560
HhaI GCGC 1 cut(s) 177
Hin1II CATG 5 cut(s) 29, 33, 51, 104, 669
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 5 cut(s) 250, 302, 349, 556, 563
HpaII CCGG 2 cut(s) 274, 560
HphI GGTGA 2 cut(s) 257, 332
Hpy166II GTNNAC 2 cut(s) 161, 538
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 560
Hpy8I GTNNAC 2 cut(s) 161, 538
HpyAV CCTTC 3 cut(s) 178, 579, 583
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 5 cut(s) 29, 217, 359, 443, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 5 cut(s) 29, 33, 51, 104, 669
HspAI GCGC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 1 cut(s) 461
LmnI GCTCC 2 cut(s) 56, 521
LpnPI CCDG 2 cut(s) 287, 573
Lsp1109I GCAGC 1 cut(s) 457
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 37
MalI GATC 1 cut(s) 463
MboI GATC 1 cut(s) 461
MboII GAAGA 6 cut(s) 16, 305, 418, 421, 650, 668
MfeI CAATTG 2 cut(s) 13, 438
MluCI AATT 7 cut(s) 13, 96, 118, 178, 438, 486, 529
MlyI GAGTC 2 cut(s) 358, 550
MnlI CCTC 5 cut(s) 146, 153, 279, 316, 375
Mph1103I ATGCAT 1 cut(s) 31
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 3 cut(s) 195, 480, 600
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 274, 560
MspR9I CCNGG 1 cut(s) 274
MunI CAATTG 2 cut(s) 13, 438
Mva1269I GAATGC 1 cut(s) 511
MwoI GCNNNNNNNGC 1 cut(s) 490
NciI CCSGG 1 cut(s) 274
NdeII GATC 1 cut(s) 461
NlaIII CATG 5 cut(s) 29, 33, 51, 104, 669
NsiI ATGCAT 1 cut(s) 31
NspI RCATGY 1 cut(s) 51
NspV TTCGAA 1 cut(s) 654
PceI AGGCCT 1 cut(s) 364
PctI GAATGC 1 cut(s) 511
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 250, 302, 563
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 2 cut(s) 357, 550
PpsI GAGTC 2 cut(s) 357, 550
RsaI GTAC 2 cut(s) 36, 192
RsaNI GTAC 2 cut(s) 35, 191
SaqAI TTAA 3 cut(s) 195, 480, 600
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 1 cut(s) 461
SchI GAGTC 2 cut(s) 358, 550
ScrFI CCNGG 1 cut(s) 274
SetI ASST 6 cut(s) 12, 25, 40, 160, 290, 486
SfcI CTRYAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 654
Sse9I AATT 7 cut(s) 13, 96, 118, 178, 438, 486, 529
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 2 cut(s) 188, 468
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 40
TaqI TCGA 3 cut(s) 145, 460, 654
TasI AATT 7 cut(s) 13, 96, 118, 178, 438, 486, 529
TfiI GAWTC 3 cut(s) 250, 302, 563
Tru1I TTAA 3 cut(s) 195, 480, 600
Tru9I TTAA 3 cut(s) 195, 480, 600
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 17, 89, 342
TspGWI ACGGA 2 cut(s) 128, 534
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 2 cut(s) 160, 537
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.