Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

12744585 .. 12745251

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAGAAAAAATAGTTTTAAAATTAAGAAAAGTTACCGTTGTGACACGTGGCACAATCTGGAGTGTTGGAATTCAAATTTTTTTATATCCAACGTGTTTTTACTTTTCTATAAATACCTTCTCATTATCATCTACCTTACACAACAATTTCATATCTTCTCAACTACTTTCAATCACATTCCTTTCTTTGTCTCAAAGTTTGAATCCATTTTTTTTCAACAAAATGACCACTGGTGCAGGTACGAATTGGTCGCTTCTTGAAGTTGCGTTGTGTATTAGCTGGGTTGAAGTTACTCATAGTTTGCTTACGGGTAATGAGATGCAGTTGCGAGAAATGTGGAGTCTTATTCATACCAATTATCTTGAGAAAATTGGTGGGAAAAGAACCAAAGAATCGATGTCCAGTTGTTGGAAATTACTTAGCCAATCGTTTAGTTCATGGAGAGACGCCTTGGCACAAGCTAGTAGTAATATTCGAAGTGGGGAAAATTACTCGGATCAGTTGTTACCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

173

Amino Acids

19.55

Weight (kDa)

9.27

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	411
AclWI	GGATC	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	72, 78
AcvI	CACGTG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	2 cut(s)	47, 95
AgsI	TTSAA	6 cut(s)	77, 174, 205, 220, 263, 290
AluBI	AGCT	2 cut(s)	282, 464
AluI	AGCT	2 cut(s)	282, 464
Alw26I	GTCTC	2 cut(s)	198, 441
AlwI	GGATC	1 cut(s)	507
ApoI	RAATTY	2 cut(s)	72, 78
AsuII	TTCGAA	1 cut(s)	478
BbrPI	CACGTG	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	198, 441
BfaI	CTAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	230
BmsI	GCATC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	82
Bpu14I	TTCGAA	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	386
Bsa29I	ATCGAT	1 cut(s)	398
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	2 cut(s)	238, 405
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	238, 405
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	198, 441
BsmBI	CGTCTC	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	398
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	478
BsrI	ACTGG	2 cut(s)	238, 405
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	1 cut(s)	499
BssNI	GRCGYC	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	422
BstKTI	GATC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	198, 441
BstMBI	GATC	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	398
BsuTUI	ATCGAT	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	441
CviJI	RGCY	3 cut(s)	282, 426, 464
CviKI_1	RGCY	3 cut(s)	282, 426, 464
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	501
DpnII	GATC	1 cut(s)	499
DraI	TTTAAA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	453
Eco72I	CACGTG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	441
FaeI	CATG	1 cut(s)	444
FaiI	YATR	7 cut(s)	88, 113, 155, 300, 354, 442, 517
FatI	CATG	1 cut(s)	440
FspBI	CTAG	1 cut(s)	465
GsaI	CCCAGC	1 cut(s)	286
GsuI	CTGGAG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	444
HinfI	GANTC	3 cut(s)	205, 343, 395
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	3 cut(s)	61, 260, 365
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	49, 95
HpyCH4V	TGCA	2 cut(s)	239, 325
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	2 cut(s)	49, 95
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	499
LpnPI	CCDG	5 cut(s)	46, 219, 225, 268, 418
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	2 cut(s)	49, 95
MaeIII	GTNAC	4 cut(s)	34, 43, 292, 507
MalI	GATC	1 cut(s)	501
MboI	GATC	1 cut(s)	499
MboII	GAAGA	1 cut(s)	150
MluCI	AATT	9 cut(s)	23, 72, 78, 148, 247, 358, 372, 416, 490
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	3 cut(s)	49, 116, 392
MseI	TTAA	2 cut(s)	20, 26
NdeII	GATC	1 cut(s)	499
NlaIII	CATG	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	205, 395
PflMI	CCANNNNNTGG	1 cut(s)	411
PleI	GAGTC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	20, 26
Sau3AI	GATC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	352
SetI	ASST	8 cut(s)	52, 98, 122, 140, 244, 284, 466, 514
SfaNI	GCATC	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	9 cut(s)	23, 72, 78, 148, 247, 358, 372, 416, 490
SspI	AATATT	1 cut(s)	475
SspMI	CTAG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	52, 98
TaqI	TCGA	2 cut(s)	398, 478
TasI	AATT	9 cut(s)	23, 72, 78, 148, 247, 358, 372, 416, 490
TfiI	GAWTC	2 cut(s)	205, 395
Tru1I	TTAA	2 cut(s)	20, 26
Tru9I	TTAA	2 cut(s)	20, 26
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	17, 142, 341, 429
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	411
XapI	RAATTY	2 cut(s)	72, 78
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.