Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

17746207 .. 17746892

Gene Structure 686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCCAGTCGTTGGAAATTACTTAGCCAATCGTTTAATACGTGGAGAGACGCCTTGGCACAAGTTAGTAGTAATATTCGAAGTAGGGAAAATTACTCGGATCAGGAACTTCAAGCACAAGCTTGGTACGCTGCCAAAACCAAAAGCAAAAATAAATCATTCAACCGATGGGAATGTTGGAATATTGTCAAAAATTGTCCTACATTTAGAGTTGTGCCAGTCGGTCCAGAAGTGCACATGAACAGCACCCCTCTACACTCTACACCCGATCATGTTCATGAAGATGATGCAGAAGAAGTGCCCGAAACGCCCCTCCCTGAACAAGCGTCGGGTTCGACCCATTATCCAATTAGGCCTGAAGGTAAGAAGGCTTTAAAGAGAAAAAGGGGGTGCTTCCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

135

Amino Acids

15.47

Weight (kDa)

8.83

Isoelectric Point (pI)

78.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	12
AclWI	GGATC	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	113, 163
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	1 cut(s)	353
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	2 cut(s)	237, 303
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmsI	GCATC	1 cut(s)	277
Bpu14I	TTCGAA	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	6, 218
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	6, 218
BseSI	GKGCMC	2 cut(s)	237, 303
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	2 cut(s)	237, 303
Bsp143I	GATC	2 cut(s)	100, 268
BspANI	GGCC	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	277
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	6, 218
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	100, 268
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	54
BstACI	GRCGYC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	103, 271
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	100, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 307
BstSLI	GKGCMC	2 cut(s)	237, 303
BstV1I	GCAGC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	355
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	2 cut(s)	59, 315
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	3 cut(s)	238, 272, 278
CviJI	RGCY	4 cut(s)	27, 122, 355, 371
CviKI_1	RGCY	4 cut(s)	27, 122, 355, 371
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	102, 270
DpnII	GATC	2 cut(s)	100, 268
DraI	TTTAAA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	3 cut(s)	241, 275, 281
FaiI	YATR	3 cut(s)	239, 273, 279
FatI	CATG	3 cut(s)	237, 271, 277
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	355
HgaI	GACGC	2 cut(s)	59, 315
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	241, 275, 281
HindIII	AAGCTT	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	3 cut(s)	104, 227, 278
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	2 cut(s)	353, 361
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	235, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 307
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	241, 275, 281
Kzo9I	GATC	2 cut(s)	100, 268
LpnPI	CCDG	6 cut(s)	19, 89, 231, 240, 330, 369
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	41
MalI	GATC	2 cut(s)	102, 270
MboI	GATC	2 cut(s)	100, 268
MboII	GAAGA	2 cut(s)	293, 305
MhlI	GDGCHC	2 cut(s)	237, 303
MluCI	AATT	4 cut(s)	17, 91, 193, 348
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	261, 323
MseI	TTAA	2 cut(s)	36, 374
MslI	CAYNNNNRTG	2 cut(s)	276, 282
MwoI	GCNNNNNNNGC	2 cut(s)	128, 307
NdeII	GATC	2 cut(s)	100, 268
NlaIII	CATG	3 cut(s)	241, 275, 281
NspV	TTCGAA	1 cut(s)	79
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	224
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	276, 282
SaqAI	TTAA	2 cut(s)	36, 374
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	100, 268
Sau96I	GGNCC	1 cut(s)	224
SduI	GDGCHC	2 cut(s)	237, 303
SetI	ASST	3 cut(s)	44, 124, 364
SfaNI	GCATC	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	1 cut(s)	224
SmiMI	CAYNNNNRTG	2 cut(s)	276, 282
Sse9I	AATT	4 cut(s)	17, 91, 193, 348
SseBI	AGGCCT	1 cut(s)	355
SspI	AATATT	2 cut(s)	76, 184
StuI	AGGCCT	1 cut(s)	355
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	2 cut(s)	79, 335
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	4 cut(s)	17, 91, 193, 348
Tru1I	TTAA	2 cut(s)	36, 374
Tru9I	TTAA	2 cut(s)	36, 374
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	254, 266, 294
Van91I	CCANNNNNTGG	1 cut(s)	12
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.