pycom10g09060

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
11990583 .. 11991885
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g09060.1

Sequence Viewer

Length: 1017 bp
ATGACTTCGTGGAAGCTCAGTGAAGATGTTACATTGTGTGAATGTTGGGTTCGCACTACTCATGACCCGATTACGGGAAATGAGATGGATAAGCGAGAAATGTGGAGTAAAATTATGAAAGCGTTTTGCGATGTACATGGAAAAGATGTACATGAAAAAGATGCCAGATCTAGTCAAGGTCTTCAAGGTTGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGCCATCTCTCATGCTTCTGGTAGTCTGCGTAGTGGGACAAGTTTAGCGGATGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCATAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTCCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCCCCAGAAGCAGACACAACCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAACAAGTGCTAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACAGTAAATATATGGAGGAACTTACTCATCAAGGTGAACTGAACATGGCATGGGAAAAGGAACGAGATGAGGAAAAAGCTACTGCTATGGCAGAAATAATAGCAGCTACTGAGGCTCGTGATGCGGCCGCTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTAGAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGCTCAAACAGATCGTGACACTATGAACAAGTCTCTAGTAGGACTGTCTCCGAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAAGGAGGCGTGCAAGAGATGTCGAAACAAGTCAAGGGGGTTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCACCACATATCCTAACTCCACAGACTTTGTATAA

Protein Analysis

339

Amino Acids

38.66

Weight (kDa)

6.2

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 427
AciI CCGC 3 cut(s) 278, 716, 720
AclWI GGATC 1 cut(s) 971
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 1 cut(s) 865
AcyI GRCGYC 1 cut(s) 494
AfaI GTAC 2 cut(s) 135, 150
AfiI CCNNNNNNNGG 2 cut(s) 73, 74
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 4 cut(s) 185, 337, 479, 870
AluBI AGCT 4 cut(s) 16, 671, 698, 954
AluI AGCT 4 cut(s) 16, 671, 698, 954
Alw26I GTCTC 5 cut(s) 278, 506, 721, 849, 864
AlwI GGATC 1 cut(s) 971
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 2 cut(s) 539, 717
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 1 cut(s) 865
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 774
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 638
AvaII GGWCC 1 cut(s) 398
AxyI CCTNAGG 1 cut(s) 536
BauI CACGAG 1 cut(s) 708
BbsI GAAGAC 2 cut(s) 173, 486
BbvI GCAGC 1 cut(s) 707
BccI CCATC 3 cut(s) 79, 242, 805
BcoDI GTCTC 5 cut(s) 278, 506, 721, 849, 864
BfaI CTAG 6 cut(s) 171, 375, 509, 848, 966, 981
BfmI CTRYAG 2 cut(s) 592, 955
BglII AGATCT 1 cut(s) 167
BisI GCNGC 3 cut(s) 696, 717, 720
BlsI GCNGC 3 cut(s) 697, 718, 721
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 949
BmsI GCATC 5 cut(s) 151, 218, 566, 703, 783
BpiI GAAGAC 2 cut(s) 173, 486
BpuEI CTTGAG 1 cut(s) 528
BsaHI GRCGYC 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 506
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 74
Bse118I RCCGGY 1 cut(s) 395
Bse21I CCTNAGG 1 cut(s) 536
BseGI GGATG 3 cut(s) 209, 286, 816
BseLI CCNNNNNNNGG 2 cut(s) 73, 74
BseMII CTCAG 4 cut(s) 31, 550, 693, 714
BseX3I CGGCCG 1 cut(s) 717
BseXI GCAGC 1 cut(s) 707
Bsh1285I CGRYCG 1 cut(s) 720
BshFI GGCC 2 cut(s) 541, 719
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 396
BslFI GGGAC 3 cut(s) 280, 505, 517
BslI CCNNNNNNNGG 2 cut(s) 73, 74
BsmAI GTCTC 5 cut(s) 278, 506, 721, 849, 864
BsmFI GGGAC 3 cut(s) 280, 505, 517
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 2 cut(s) 541, 719
Bso31I GGTCTC 1 cut(s) 506
Bsp1407I TGTACA 2 cut(s) 133, 148
Bsp143I GATC 3 cut(s) 167, 823, 976
BspACI CCGC 3 cut(s) 278, 716, 720
BspANI GGCC 2 cut(s) 541, 719
BspCNI CTCAG 4 cut(s) 30, 549, 694, 715
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 949
BspPI GGATC 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 2 cut(s) 133, 148
BssAI RCCGGY 1 cut(s) 395
BssMI GATC 3 cut(s) 167, 823, 976
BssNI GRCGYC 1 cut(s) 494
BssSI CACGAG 1 cut(s) 708
Bst2BI CACGAG 1 cut(s) 708
Bst4CI ACNGT 4 cut(s) 419, 434, 596, 858
BstACI GRCGYC 1 cut(s) 494
BstAUI TGTACA 2 cut(s) 133, 148
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 5 cut(s) 17, 536, 702, 723, 797
BstF5I GGATG 3 cut(s) 209, 286, 816
BstKTI GATC 3 cut(s) 170, 826, 979
BstMAI GTCTC 5 cut(s) 278, 506, 721, 849, 864
BstMBI GATC 3 cut(s) 167, 823, 976
BstMCI CGRYCG 1 cut(s) 720
BstMWI GCNNNNNNNGC 3 cut(s) 704, 713, 913
BstSFI CTRYAG 2 cut(s) 592, 955
BstV1I GCAGC 1 cut(s) 707
BstV2I GAAGAC 2 cut(s) 173, 486
BstX2I RGATCY 2 cut(s) 167, 976
BstYI RGATCY 2 cut(s) 167, 976
BstZI CGGCCG 1 cut(s) 717
Bsu36I CCTNAGG 1 cut(s) 536
BsuRI GGCC 2 cut(s) 541, 719
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 3 cut(s) 209, 286, 816
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 918
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 61
CciNI GCGGCCGC 1 cut(s) 717
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 134, 149
CspAI ACCGGT 1 cut(s) 395
CspCI CAANNNNNGTGG 1 cut(s) 991
CviAII CATG 7 cut(s) 62, 137, 152, 242, 412, 637, 642
CviJI RGCY 9 cut(s) 16, 467, 541, 671, 698, 707, 719, 815, 954
CviKI_1 RGCY 9 cut(s) 16, 467, 541, 671, 698, 707, 719, 815, 954
CviQI GTAC 2 cut(s) 134, 149
DdeI CTNAG 5 cut(s) 17, 536, 702, 723, 797
DpnI GATC 3 cut(s) 169, 825, 978
DpnII GATC 3 cut(s) 167, 823, 976
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 717
EagI CGGCCG 1 cut(s) 717
EclXI CGGCCG 1 cut(s) 717
Eco147I AGGCCT 1 cut(s) 541
Eco31I GGTCTC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 398
Eco52I CGGCCG 1 cut(s) 717
Eco81I CCTNAGG 1 cut(s) 536
EcoRI GAATTC 1 cut(s) 865
FaeI CATG 7 cut(s) 65, 140, 155, 245, 415, 640, 645
FaqI GGGAC 3 cut(s) 280, 505, 517
FatI CATG 7 cut(s) 61, 136, 151, 241, 411, 636, 641
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 3 cut(s) 696, 717, 720
FokI GGATG 3 cut(s) 196, 293, 823
Fsp4HI GCNGC 3 cut(s) 696, 717, 720
FspBI CTAG 6 cut(s) 171, 375, 509, 848, 966, 981
GluI GCNGC 3 cut(s) 696, 717, 720
HaeIII GGCC 2 cut(s) 541, 719
HapII CCGG 1 cut(s) 396
HgaI GACGC 1 cut(s) 502
Hin1I GRCGYC 1 cut(s) 494
Hin1II CATG 7 cut(s) 65, 140, 155, 245, 415, 640, 645
HinfI GANTC 2 cut(s) 368, 523
HpaII CCGG 1 cut(s) 396
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 2 cut(s) 428, 629
Hpy188I TCNGA 2 cut(s) 864, 889
Hpy188III TCNNGA 6 cut(s) 62, 401, 710, 749, 782, 827
Hpy8I GTNNAC 2 cut(s) 428, 629
HpyAV CCTTC 2 cut(s) 482, 903
HpyCH4III ACNGT 4 cut(s) 419, 434, 596, 858
HpyCH4V TGCA 3 cut(s) 314, 415, 920
HpyF10VI GCNNNNNNNGC 3 cut(s) 704, 713, 913
HpyF3I CTNAG 5 cut(s) 17, 536, 702, 723, 797
Hsp92I GRCGYC 1 cut(s) 494
Hsp92II CATG 7 cut(s) 65, 140, 155, 245, 415, 640, 645
Kzo9I GATC 3 cut(s) 167, 823, 976
LpnPI CCDG 8 cut(s) 178, 234, 409, 414, 453, 510, 523, 964
Lsp1109I GCAGC 1 cut(s) 707
LweI GCATC 5 cut(s) 151, 218, 566, 703, 783
MaeI CTAG 6 cut(s) 171, 375, 509, 848, 966, 981
MaeIII GTNAC 2 cut(s) 28, 827
MalI GATC 3 cut(s) 169, 825, 978
MboI GATC 3 cut(s) 167, 823, 976
MboII GAAGA 5 cut(s) 35, 173, 491, 570, 815
MflI RGATCY 2 cut(s) 167, 976
MluCI AATT 4 cut(s) 111, 357, 384, 865
MlyI GAGTC 1 cut(s) 517
MmeI TCCRAC 2 cut(s) 173, 203
MnlI CCTC 6 cut(s) 545, 552, 601, 655, 697, 906
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 704, 713, 913
NdeII GATC 3 cut(s) 167, 823, 976
NlaIII CATG 7 cut(s) 65, 140, 155, 245, 415, 640, 645
NlaIV GGNNCC 1 cut(s) 949
NmuCI GTSAC 1 cut(s) 827
NotI GCGGCCGC 1 cut(s) 717
PagI TCATGA 1 cut(s) 61
PceI AGGCCT 1 cut(s) 541
PctI GAATGC 1 cut(s) 302
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 1 cut(s) 368
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 3 cut(s) 697, 718, 721
PleI GAGTC 1 cut(s) 517
PpsI GAGTC 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 949
PspPI GGNCC 1 cut(s) 398
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 167, 976
RsaI GTAC 2 cut(s) 135, 150
RsaNI GTAC 2 cut(s) 134, 149
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 3 cut(s) 696, 717, 720
Sau3AI GATC 3 cut(s) 167, 823, 976
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 517
SetI ASST 9 cut(s) 18, 181, 190, 550, 574, 628, 673, 700, 956
SfaNI GCATC 5 cut(s) 151, 218, 566, 703, 783
SfcI CTRYAG 2 cut(s) 592, 955
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 4 cut(s) 111, 357, 384, 865
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 3 cut(s) 278, 716, 720
SspI AATATT 1 cut(s) 875
SspMI CTAG 6 cut(s) 171, 375, 509, 848, 966, 981
StuI AGGCCT 1 cut(s) 541
TaaI ACNGT 4 cut(s) 419, 434, 596, 858
TaqI TCGA 3 cut(s) 748, 781, 930
TasI AATT 4 cut(s) 111, 357, 384, 865
TatI WGTACW 2 cut(s) 133, 148
TauI GCSGC 2 cut(s) 719, 722
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 1 cut(s) 695
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 4 cut(s) 131, 168, 767, 851
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 865
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 6 cut(s) 171, 375, 509, 848, 966, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.