MD03G1238900.v1.1

gpi-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000206
Physical Location & Seq
Forward (+)
32411256 .. 32413576
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1238900.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGAGGAACTTACTCACCAAGGTGAACTGAACATGGCACGAGAAAAGACTAGAGATGAGGAAAAAATTGCTGCTATGGCAGCAATAATAGCAGCTACTGAGGCCCGTGATGCGGCAGCTGAGAGACAAAGAGAAGTAGTTAATCGAGAGAACGAGCTAGTTAGAGAAGCACTTCATCGAGAAAATGAAATGCTTAGAGAAGAAATGATGTCTCAAGCAGATCGTGACACTATGAGCAAGTCTCTAGTAGGACTGTCTCCGAATTCTAAATATTTTTGGGCATCAGAAAAAAGAGATGTCATGCGAAGGAGGCGTGCAAGAGATGCAGAAACAAGTCAAGGGGGTTCTAGCTACACAAATCATGGCAACCAAGATCCTAGCACCACATATCCTAACTTGAGAGACTTTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.78

Weight (kDa)

5.5

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 112
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 4 cut(s) 95, 119, 157, 351
AluI AGCT 4 cut(s) 95, 119, 157, 351
Alw26I GTCTC 5 cut(s) 118, 216, 246, 261, 396
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 4 cut(s) 71, 80, 92, 116
ApoI RAATTY 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 8, 35
BauI CACGAG 1 cut(s) 39
BbvI GCAGC 4 cut(s) 58, 92, 104, 128
BcoDI GTCTC 5 cut(s) 118, 216, 246, 261, 396
BfaI CTAG 5 cut(s) 51, 158, 245, 348, 378
BisI GCNGC 5 cut(s) 72, 81, 93, 114, 117
BlsI GCNGC 5 cut(s) 73, 82, 94, 115, 118
BmgT120I GGNCC 1 cut(s) 103
BmsI GCATC 3 cut(s) 100, 290, 313
BplI GAGNNNNNCTC 2 cut(s) 226, 258
BpuEI CTTGAG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 112
BseMII CTCAG 2 cut(s) 90, 111
BseXI GCAGC 4 cut(s) 58, 92, 104, 128
BshFI GGCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 5 cut(s) 118, 216, 246, 261, 396
BsnI GGCC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 220, 373
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 91, 112
BspPI GGATC 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 220, 373
BssSI CACGAG 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 99, 120, 194
BstKTI GATC 2 cut(s) 223, 376
BstMAI GTCTC 5 cut(s) 118, 216, 246, 261, 396
BstMBI GATC 2 cut(s) 220, 373
BstMWI GCNNNNNNNGC 7 cut(s) 77, 80, 89, 101, 110, 310, 323
BstV1I GCAGC 4 cut(s) 58, 92, 104, 128
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 315
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 3 cut(s) 34, 301, 362
CviJI RGCY 5 cut(s) 95, 104, 119, 157, 351
CviKI_1 RGCY 5 cut(s) 95, 104, 119, 157, 351
DdeI CTNAG 3 cut(s) 99, 120, 194
DpnI GATC 2 cut(s) 222, 375
DpnII GATC 2 cut(s) 220, 373
Eco130I CCWWGG 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaeI CATG 3 cut(s) 37, 304, 365
FaiI YATR 7 cut(s) 35, 77, 233, 302, 363, 388, 412
FatI CATG 3 cut(s) 33, 300, 361
Fnu4HI GCNGC 5 cut(s) 72, 81, 93, 114, 117
Fsp4HI GCNGC 5 cut(s) 72, 81, 93, 114, 117
FspBI CTAG 5 cut(s) 51, 158, 245, 348, 378
GluI GCNGC 5 cut(s) 72, 81, 93, 114, 117
HaeIII GGCC 1 cut(s) 104
Hin1II CATG 3 cut(s) 37, 304, 365
HphI GGTGA 2 cut(s) 8, 35
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 2 cut(s) 261, 286
Hpy188III TCNNGA 3 cut(s) 146, 179, 224
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 300
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 317, 326
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 80, 89, 101, 110, 310, 323
HpyF3I CTNAG 3 cut(s) 99, 120, 194
Hsp92II CATG 3 cut(s) 37, 304, 365
Kzo9I GATC 2 cut(s) 220, 373
Lsp1109I GCAGC 4 cut(s) 58, 92, 104, 128
LweI GCATC 3 cut(s) 100, 290, 313
MaeI CTAG 5 cut(s) 51, 158, 245, 348, 378
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 222, 375
MboI GATC 2 cut(s) 220, 373
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 373
MluCI AATT 2 cut(s) 66, 262
MnlI CCTC 3 cut(s) 52, 94, 303
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 119
MwoI GCNNNNNNNGC 7 cut(s) 77, 80, 89, 101, 110, 310, 323
NdeII GATC 2 cut(s) 220, 373
NlaIII CATG 3 cut(s) 37, 304, 365
NmuCI GTSAC 1 cut(s) 224
OliI CACNNNNGTG 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 171
PkrI GCNGC 5 cut(s) 73, 82, 94, 115, 118
PspPI GGNCC 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 5 cut(s) 72, 81, 93, 114, 117
Sau3AI GATC 2 cut(s) 220, 373
Sau96I GGNCC 1 cut(s) 103
SetI ASST 5 cut(s) 25, 97, 121, 159, 353
SfaNI GCATC 3 cut(s) 100, 290, 313
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 213, 397
SmoI CTYRAG 2 cut(s) 213, 397
Sse9I AATT 2 cut(s) 66, 262
SsiI CCGC 1 cut(s) 113
SspI AATATT 1 cut(s) 272
SspMI CTAG 5 cut(s) 51, 158, 245, 348, 378
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 145, 178
TasI AATT 2 cut(s) 66, 262
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 4 cut(s) 71, 80, 92, 116
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 164, 201
XapI RAATTY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 5 cut(s) 51, 158, 245, 348, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.