Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010856.1

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

7774 .. 8516

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010856.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgggagattcgggtaccaattggtctaccgacgagcaaattcaattgtgtgatttatgggcacgtaagactgtgtgcccgatcaccggaaaacatataacctcctccaagttatgggaaaaggttcatgctgattatgtgcaaaattggcaaggtccacctacaagccgaactcctcaagctctccaatctcagtttcgaacgttgaaaaaaattctcaaagattggcacaatgcacaaatgacctcccgtaatcgtatagatagcgctactgcctccaaaaatgagtctccaattgagttggatgatgatatcgtttcggagacaccatcaagctccatgccaagaccaatgggacaaaagagagccaaagaagcaaagaagaaaggaaagaaggtgcaagatgcagctgaaagtatggctcttgctattcaagtcatggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

148

Amino Acids

16.58

Weight (kDa)

9.3

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	14
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	39, 213
AfaI	GTAC	1 cut(s)	16
AfeI	AGCGCT	1 cut(s)	268
AfiI	CCNNNNNNNGG	2 cut(s)	86, 114
AgsI	TTSAA	3 cut(s)	44, 208, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	3 cut(s)	182, 336, 410
AluI	AGCT	3 cut(s)	182, 336, 410
Alw26I	GTCTC	2 cut(s)	294, 317
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	39, 213
Asp700I	GAANNNNTTC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	76
AsuII	TTCGAA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	64, 80
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	1 cut(s)	337
BcoDI	GTCTC	2 cut(s)	294, 317
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	16
BmsI	GCATC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 114
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	86, 114
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	94, 165
BseSI	GKGCMC	2 cut(s)	64, 80
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	2 cut(s)	86, 114
BsmAI	GTCTC	2 cut(s)	294, 317
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	64, 80
Bsp143I	GATC	1 cut(s)	81
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	14
BssMI	GATC	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	294, 317
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 374
BstSLI	GKGCMC	2 cut(s)	64, 80
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	3 cut(s)	128, 340, 439
CviJI	RGCY	7 cut(s)	168, 182, 336, 368, 410, 422, 443
CviKI_1	RGCY	7 cut(s)	168, 182, 336, 368, 410, 422, 443
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	192
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	155
Eco47III	AGCGCT	1 cut(s)	268
EcoRV	GATATC	1 cut(s)	313
FaeI	CATG	3 cut(s)	131, 343, 442
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	127, 339, 438
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	1 cut(s)	408
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	131, 343, 442
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HinfI	GANTC	2 cut(s)	8, 287
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	27, 158
Hpy188I	TCNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	27, 158
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	64, 203
HpyCH4V	TGCA	4 cut(s)	142, 236, 400, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 374
HpyF3I	CTNAG	1 cut(s)	192
HpySE526I	ACGT	2 cut(s)	64, 203
Hsp92II	CATG	3 cut(s)	131, 343, 442
HspAI	GCGC	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	2 cut(s)	64, 203
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	394
MfeI	CAATTG	3 cut(s)	19, 44, 294
MhlI	GDGCHC	2 cut(s)	64, 80
MluCI	AATT	6 cut(s)	19, 39, 44, 145, 213, 294
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	112, 115, 186, 256, 286
MroXI	GAANNNNTTC	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	87
MunI	CAATTG	3 cut(s)	19, 44, 294
MwoI	GCNNNNNNNGC	2 cut(s)	148, 374
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	3 cut(s)	131, 343, 442
NlaIV	GGNNCC	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	64, 80
SfaNI	GCATC	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	6 cut(s)	19, 39, 44, 145, 213, 294
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	67, 206
TaqI	TCGA	1 cut(s)	199
TasI	AATT	6 cut(s)	19, 39, 44, 145, 213, 294
TfiI	GAWTC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	2 cut(s)	39, 213
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.