Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

7551258 .. 7552204

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGGGGAAGCTTTTTCCAATTGGCAATACAAAGAAGAGATTCAATTATGCGATTCGTGGGCACGTATGACCGTATGCCCAATCACTGGCAAACAAATATCCTTATCAAGGTTATGGGAAAAATTTTTTGCCGATTATGTGCAACATTGGGATGGTCCGCCAACAAGCCGAAGTCCTCAAGCTCTCCAATCCCATTTTCGAAATTTGAAGACAATGCTCAAGGTTTGGCACAATGTGCAAATGACCTCCCGCAATCGTATTGCAAGCGGCACCAATAGAATGGATGAGAAGAAATTTGAAAAAGACCAATGTTGGGATAAAGTTAAGAGCCATCCATATTTTGTTGATCCGCCATCTACTCCATGTCCACCGGCACCATATTCGACACCAAGTCCTTTCCAAAATGAGTCTCCAATTGATTTGGATGGTGAAGTAGTTGTGGAGACACCACCAAGCTCAATTCCAAGACCAATTGGAATAAAGAAAGCCAAAGAAGCAAAGAGAAAAGGAAAGATGACACAAGATGCAGCGGAATGTATGGCTCTTGCCATTCAATCCATGGCCGAATCAACTCAAGCTTCTGTTGAGTCAGTGAAGAAAAGAAACGAAGAAATAGCTGCTCACACAAGAACGGTATTTGAATTTGAAGAGGCAAAGAAAGATGCAAGAATTATGGCCATGGATACTAATTCATGGTCTCCGGAAAGAATTAGTTGGTGGAAAGATAGGAAGAGAGGTATTATGGCAAAAACATTGTTTGGTCGCGATAACAGCAATGACGGCGGTAGTGGCAATGACGGCGGTAGCAACGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

273

Amino Acids

30.85

Weight (kDa)

8.5

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	97 - 234	5.9e-11	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	269, 373
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccII	CGCG	1 cut(s)	765
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	7 cut(s)	158, 250, 267, 350, 530, 783, 801
AclWI	GGATC	2 cut(s)	341, 806
AcoI	YGGCCR	2 cut(s)	561, 675
AcsI	RAATTY	4 cut(s)	122, 202, 293, 641
AdeI	CACNNNGTG	1 cut(s)	235
AfiI	CCNNNNNNNGG	3 cut(s)	86, 108, 313
AgsI	TTSAA	6 cut(s)	44, 208, 299, 554, 641, 647
AhdI	GACNNNNNGTC	1 cut(s)	390
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	5 cut(s)	11, 182, 456, 578, 617
AluI	AGCT	5 cut(s)	11, 182, 456, 578, 617
Alw26I	GTCTC	3 cut(s)	414, 437, 702
AlwI	GGATC	2 cut(s)	341, 806
Aor13HI	TCCGGA	1 cut(s)	700
AoxI	GGCC	2 cut(s)	561, 675
ApeKI	GCWGC	2 cut(s)	527, 617
ApoI	RAATTY	4 cut(s)	122, 202, 293, 641
Asp700I	GAANNNNTTC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	440
AsuII	TTCGAA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	677
BanI	GGYRCC	2 cut(s)	269, 373
BbsI	GAAGAC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	539, 604
BccI	CCATC	4 cut(s)	146, 339, 361, 419
BceAI	ACGGC	2 cut(s)	796, 814
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BciVI	GTATCC	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	414, 437, 702
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	3 cut(s)	268, 528, 618
BlsI	GCNGC	3 cut(s)	269, 529, 619
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	271, 375
BmsI	GCATC	2 cut(s)	514, 652
BpiI	GAAGAC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	199
BpuEI	CTTGAG	3 cut(s)	162, 203, 558
BsaAI	YACGTR	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	2 cut(s)	558, 678
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 108, 313
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	2 cut(s)	781, 799
BseAI	TCCGGA	1 cut(s)	700
BseDI	CCNNGG	2 cut(s)	558, 678
BseGI	GGATG	4 cut(s)	157, 289, 331, 430
BseLI	CCNNNNNNNGG	3 cut(s)	86, 108, 313
BseMI	GCAATG	2 cut(s)	781, 799
BseNI	ACTGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	539, 604
Bsh1236I	CGCG	1 cut(s)	765
BshFI	GGCC	2 cut(s)	563, 677
BshNI	GGYRCC	2 cut(s)	269, 373
BsiSI	CCGG	2 cut(s)	371, 701
BslI	CCNNNNNNNGG	3 cut(s)	86, 108, 313
BsmAI	GTCTC	3 cut(s)	414, 437, 702
BsnI	GGCC	2 cut(s)	563, 677
Bso31I	GGTCTC	1 cut(s)	702
Bsp119I	TTCGAA	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	346, 811
Bsp19I	CCATGG	2 cut(s)	558, 678
Bsp68I	TCGCGA	1 cut(s)	765
BspACI	CCGC	7 cut(s)	158, 250, 267, 350, 530, 783, 801
BspANI	GGCC	2 cut(s)	563, 677
BspEI	TCCGGA	1 cut(s)	700
BspFNI	CGCG	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	271, 375
BspPI	GGATC	2 cut(s)	341, 806
BspT104I	TTCGAA	1 cut(s)	199
BspT107I	GGYRCC	2 cut(s)	269, 373
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	2 cut(s)	781, 799
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	558, 678
BssMI	GATC	2 cut(s)	346, 811
BssT1I	CCWWGG	2 cut(s)	558, 678
Bst4CI	ACNGT	2 cut(s)	73, 634
Bst6I	CTCTTC	3 cut(s)	30, 642, 725
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstBAI	YACGTR	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	265
BstDSI	CCRYGG	2 cut(s)	558, 678
BstENI	CCTNNNNNAGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	157, 289, 331, 430
BstFNI	CGCG	1 cut(s)	765
BstKTI	GATC	2 cut(s)	349, 814
BstMAI	GTCTC	3 cut(s)	414, 437, 702
BstMBI	GATC	2 cut(s)	346, 811
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 494, 771, 780, 789, 798
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	2 cut(s)	539, 604
BstV2I	GAAGAC	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	563, 677
BtgI	CCRYGG	2 cut(s)	558, 678
BtsCI	GGATG	4 cut(s)	157, 289, 331, 430
BtsIMutI	CAGTG	2 cut(s)	84, 597
BtuMI	TCGCGA	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	4 cut(s)	363, 559, 679, 693
DpnI	GATC	2 cut(s)	348, 813
DpnII	GATC	2 cut(s)	346, 811
DraIII	CACNNNGTG	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	390
EaeI	YGGCCR	2 cut(s)	561, 675
Eam1104I	CTCTTC	3 cut(s)	30, 642, 725
Eam1105I	GACNNNNNGTC	1 cut(s)	390
EarI	CTCTTC	3 cut(s)	30, 642, 725
EciI	GGCGGA	2 cut(s)	147, 339
Eco130I	CCWWGG	2 cut(s)	558, 678
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	558, 678
ErhI	CCWWGG	2 cut(s)	558, 678
FaeI	CATG	4 cut(s)	366, 562, 682, 696
FatI	CATG	4 cut(s)	362, 558, 678, 692
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	3 cut(s)	268, 528, 618
FokI	GGATG	4 cut(s)	164, 296, 318, 437
Fsp4HI	GCNGC	3 cut(s)	268, 528, 618
GluI	GCNGC	3 cut(s)	268, 528, 618
HaeIII	GGCC	2 cut(s)	563, 677
HapII	CCGG	2 cut(s)	371, 701
Hin1II	CATG	4 cut(s)	366, 562, 682, 696
HindIII	AAGCTT	2 cut(s)	9, 576
HinfI	GANTC	5 cut(s)	40, 53, 407, 566, 587
HpaII	CCGG	2 cut(s)	371, 701
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188III	TCNNGA	2 cut(s)	701, 764
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	73, 634
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	142, 238, 263, 527, 665
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 494, 771, 780, 789, 798
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	366, 562, 682, 696
Kpn2I	TCCGGA	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	346, 811
LpnPI	CCDG	3 cut(s)	72, 384, 714
Lsp1109I	GCAGC	2 cut(s)	539, 604
LweI	GCATC	2 cut(s)	514, 652
MaeII	ACGT	1 cut(s)	64
MalI	GATC	2 cut(s)	348, 813
MboI	GATC	2 cut(s)	346, 811
MboII	GAAGA	7 cut(s)	47, 220, 301, 607, 620, 659, 742
MfeI	CAATTG	3 cut(s)	19, 414, 471
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	677
MluNI	TGGCCA	1 cut(s)	677
MlyI	GAGTC	2 cut(s)	416, 596
MnlI	CCTC	4 cut(s)	186, 256, 643, 728
Mox20I	TGGCCA	1 cut(s)	677
MroI	TCCGGA	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	39
MscI	TGGCCA	1 cut(s)	677
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	150
Msp20I	TGGCCA	1 cut(s)	677
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	371, 701
MunI	CAATTG	3 cut(s)	19, 414, 471
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	6 cut(s)	235, 494, 771, 780, 789, 798
NcoI	CCATGG	2 cut(s)	558, 678
NdeII	GATC	2 cut(s)	346, 811
NlaIII	CATG	4 cut(s)	366, 562, 682, 696
NlaIV	GGNNCC	2 cut(s)	271, 375
NruI	TCGCGA	1 cut(s)	765
NspV	TTCGAA	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	40, 53, 566
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	3 cut(s)	269, 529, 619
PleI	GAGTC	2 cut(s)	415, 595
PpsI	GAGTC	2 cut(s)	415, 595
Ppu21I	YACGTR	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	271, 375
PspPI	GGNCC	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	765
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	3 cut(s)	268, 528, 618
Sau3AI	GATC	2 cut(s)	346, 811
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	416, 596
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	2 cut(s)	514, 652
SfuI	TTCGAA	1 cut(s)	199
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	177, 218, 573
SmoI	CTYRAG	3 cut(s)	177, 218, 573
SsiI	CCGC	7 cut(s)	158, 250, 267, 350, 530, 783, 801
StyI	CCWWGG	2 cut(s)	558, 678
TaaI	ACNGT	2 cut(s)	73, 634
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	199, 383
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	40, 53, 566
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	91, 597
TseI	GCWGC	2 cut(s)	527, 617
TspDTI	ATGAA	1 cut(s)	681
TspRI	CASTG	2 cut(s)	91, 597
Van91I	CCANNNNNTGG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	106
XapI	RAATTY	4 cut(s)	122, 202, 293, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.