pycom03g11190

gpi-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000206
Physical Location & Seq
Forward (+)
10839709 .. 10840793
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g11190.1

Sequence Viewer

Length: 876 bp
ATGAGACACTACAAGCAGAAGCATTCTACAATACAAAGAACCGTAACAAATCATTCAACAAATGGGAATGTTGGCAAATTATCAAAGATTGCCCTAGATACACAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCGCCAGAAGCAGACACAGCCGAACAAGAAGCCAACACATTTGAAGACACGGAAGGGACGCCTGAAGAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTTAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGGAACTTGCTCGTCAAGGTGAACTGAACATGGCATGGGAAAAGGCTAGAGATGAGGAAAAAGCTACTACTATGACAGCAATAATAGCAGCTACTGAGGCTCGTGATGCTGCGGCTGAGAGACAAAGAGAAATAGTTAATCGAGAGAACGAGATGATTATAGAAGCACTTCATCGAGAGAATGAGATGCTTAGAGAAGAAAGGATGGCTCAAACAGATCGTGACACTATGAACAAGTCTCTAGTAGGACTGTCTCCAAATTCAAAATATTTTTGGACATCAGAAAAAAGAGATGTCGTGCGAATGAGGCATGCAAGAGATGCCGAAACAAGTCAAGGGGATTCCAGCTACAGAAATCCTAGCAACCAAGATCCTAGCACCACATATCCAACTCCACAGACTTTGTATAATTTCGCATTTATTTGTACTACTTTATTTAATTTGTTATGTAATTTCTTAACATTTTTAGAACTTTATTTAATTTCTTATTTATTTTTAGAACTTTATTTAATTTCTTATGTAATTTTTATACTTTATTTAAATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

34.11

Weight (kDa)

9.73

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 249
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 692
AcsI RAATTY 1 cut(s) 586
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 754
AgeI ACCGGT 1 cut(s) 115
AgsI TTSAA 3 cut(s) 57, 199, 591
AleI CACNNNNGTG 1 cut(s) 106
AluBI AGCT 3 cut(s) 392, 419, 675
AluI AGCT 3 cut(s) 392, 419, 675
Alw26I GTCTC 4 cut(s) 226, 442, 570, 585
AlwI GGATC 1 cut(s) 692
AlwNI CAGNNNCTG 1 cut(s) 422
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 416, 437
ApoI RAATTY 1 cut(s) 586
AsiGI ACCGGT 1 cut(s) 115
Asp700I GAANNNNTTC 1 cut(s) 495
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 118
AxyI CCTNAGG 1 cut(s) 256
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 424, 428
BccI CCATC 1 cut(s) 526
BcoDI GTCTC 4 cut(s) 226, 442, 570, 585
BfaI CTAG 5 cut(s) 95, 375, 569, 687, 702
BfmI CTRYAG 1 cut(s) 676
BisI GCNGC 3 cut(s) 417, 438, 441
BlsI GCNGC 3 cut(s) 418, 439, 442
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmsI GCATC 4 cut(s) 286, 424, 504, 637
BpiI GAAGAC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 115
Bse21I CCTNAGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 414, 435
BseXI GCAGC 2 cut(s) 424, 428
BshFI GGCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 115
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 2 cut(s) 225, 237
BsmAI GTCTC 4 cut(s) 226, 442, 570, 585
BsmFI GGGAC 2 cut(s) 225, 237
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 544, 697
BspACI CCGC 1 cut(s) 440
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 2 cut(s) 415, 436
BspPI GGATC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 2 cut(s) 544, 697
BssNI GRCGYC 1 cut(s) 214
BssSI CACGAG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 429
Bst4CI ACNGT 4 cut(s) 43, 139, 154, 579
BstACI GRCGYC 1 cut(s) 214
BstAPI GCANNNNNTGC 1 cut(s) 647
BstC8I GCNNGC 1 cut(s) 639
BstDEI CTNAG 4 cut(s) 256, 423, 444, 518
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 2 cut(s) 547, 700
BstMAI GTCTC 4 cut(s) 226, 442, 570, 585
BstMBI GATC 2 cut(s) 544, 697
BstMWI GCNNNNNNNGC 6 cut(s) 172, 413, 425, 434, 634, 647
BstNSI RCATGY 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 676
BstV1I GCAGC 2 cut(s) 424, 428
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
Bsu36I CCTNAGG 1 cut(s) 256
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 537
Cac8I GCNNGC 1 cut(s) 639
CaiI CAGNNNCTG 1 cut(s) 422
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 118
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 753
CspAI ACCGGT 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 4 cut(s) 132, 358, 363, 638
CviQI GTAC 1 cut(s) 753
DdeI CTNAG 4 cut(s) 256, 423, 444, 518
DpnI GATC 2 cut(s) 546, 699
DpnII GATC 2 cut(s) 544, 697
DraI TTTAAA 1 cut(s) 867
DrdI GACNNNNNNGTC 1 cut(s) 249
DseDI GACNNNNNNGTC 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 256
FaeI CATG 4 cut(s) 135, 361, 366, 641
FaqI GGGAC 2 cut(s) 225, 237
FatI CATG 4 cut(s) 131, 357, 362, 637
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 417, 438, 441
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 3 cut(s) 417, 438, 441
FspBI CTAG 5 cut(s) 95, 375, 569, 687, 702
GluI GCNGC 3 cut(s) 417, 438, 441
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 222
Hin1I GRCGYC 1 cut(s) 214
Hin1II CATG 4 cut(s) 135, 361, 366, 641
HinfI GANTC 2 cut(s) 243, 668
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 148, 350
Hpy188I TCNGA 1 cut(s) 610
Hpy188III TCNNGA 5 cut(s) 121, 431, 470, 503, 548
Hpy8I GTNNAC 2 cut(s) 148, 350
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 4 cut(s) 43, 139, 154, 579
HpyCH4V TGCA 2 cut(s) 135, 641
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 413, 425, 434, 634, 647
HpyF3I CTNAG 4 cut(s) 256, 423, 444, 518
Hsp92I GRCGYC 1 cut(s) 214
Hsp92II CATG 4 cut(s) 135, 361, 366, 641
Kzo9I GATC 2 cut(s) 544, 697
LpnPI CCDG 6 cut(s) 129, 134, 173, 230, 242, 685
Lsp1109I GCAGC 2 cut(s) 424, 428
LweI GCATC 4 cut(s) 286, 424, 504, 637
MaeI CTAG 5 cut(s) 95, 375, 569, 687, 702
MaeIII GTNAC 2 cut(s) 43, 548
MalI GATC 2 cut(s) 546, 699
MboI GATC 2 cut(s) 544, 697
MboII GAAGA 4 cut(s) 211, 232, 291, 536
MfeI CAATTG 1 cut(s) 104
MflI RGATCY 1 cut(s) 697
MluCI AATT 9 cut(s) 77, 104, 586, 736, 766, 778, 807, 837, 849
MlyI GAGTC 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 740
MnlI CCTC 5 cut(s) 272, 322, 376, 418, 627
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 6 cut(s) 465, 765, 785, 806, 836, 866
MslI CAYNNNNRTG 1 cut(s) 106
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 104
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 6 cut(s) 172, 413, 425, 434, 634, 647
NdeII GATC 2 cut(s) 544, 697
NlaIII CATG 4 cut(s) 135, 361, 366, 641
NmuCI GTSAC 1 cut(s) 548
NspI RCATGY 1 cut(s) 641
OliI CACNNNNGTG 1 cut(s) 106
PaeI GCATGC 1 cut(s) 641
PceI AGGCCT 1 cut(s) 261
PctI GAATGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 1 cut(s) 668
PinAI ACCGGT 1 cut(s) 115
PkrI GCNGC 3 cut(s) 418, 439, 442
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 1 cut(s) 754
RsaNI GTAC 1 cut(s) 753
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 6 cut(s) 465, 765, 785, 806, 836, 866
SatI GCNGC 3 cut(s) 417, 438, 441
Sau3AI GATC 2 cut(s) 544, 697
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 237
SetI ASST 6 cut(s) 270, 295, 349, 394, 421, 677
SfaNI GCATC 4 cut(s) 286, 424, 504, 637
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 1 cut(s) 118
SmiI ATTTAAAT 1 cut(s) 867
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 641
Sse9I AATT 9 cut(s) 77, 104, 586, 736, 766, 778, 807, 837, 849
SseBI AGGCCT 1 cut(s) 261
SsiI CCGC 1 cut(s) 440
SspI AATATT 2 cut(s) 596, 871
SspMI CTAG 5 cut(s) 95, 375, 569, 687, 702
StuI AGGCCT 1 cut(s) 261
SwaI ATTTAAAT 1 cut(s) 867
TaaI ACNGT 4 cut(s) 43, 139, 154, 579
TaqI TCGA 2 cut(s) 469, 502
TasI AATT 9 cut(s) 77, 104, 586, 736, 766, 778, 807, 837, 849
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 6 cut(s) 465, 765, 785, 806, 836, 866
Tru9I TTAA 6 cut(s) 465, 765, 785, 806, 836, 866
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 2 cut(s) 416, 437
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 2 cut(s) 488, 572
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 118
XapI RAATTY 1 cut(s) 586
XceI RCATGY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 5 cut(s) 95, 375, 569, 687, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.