Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Forward (+)

30729399 .. 30732535

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38832.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGAGAGTCGGATACTAGGACCAAGGAGGAGGAAGTTCAATTATGCGAATCATGGGCGGCGGTCACCGTATGCCCCATTACCGCCAATCACCAAACCCTTCTAAGGATGTGGCTCAAGGTTCATGAACATTATATTGAAAATTGGATGGGATCAACACCGGTTCGACCGTTGGGAGCTCTTCAAGCTCATTTCAAGCCCTTGAAGAAGATTGTCAAAGAGTGGCACAATGCAAAAATTCAGTCGGCAATCATAGACCAAGCGGCACCAATCAATTGGATGAGGGTGACTAAGAAGCAATTCGACCATCATGAATGTTGGGAGGTGGTGAAGGACCACCCTAGTTTTAGAAATGCACCTACACCTCCGGTCGCCCCGTTTGTTTATTCCATGGCTAGTGGTTCCCAAACCGAATCACCAATTGATTTGGATGAAGAGGTTGTATTGGAGACGCCTCCTAGCTCTGTTGGAAGGCCAATGGGACAAAAGGCCGCCAAAGAAGCAAGAAGGAAAGTAAAAAATAAAGAGGATGTGGGTGAATCAATGGTTCAAGCCTTACTCGCCATTTCCGAGAGCAACAAAATTTCCAATGAGATTCTTAGGAAAAAGGAAGAGAACCATTGCAGCTTGGCTCATGCAACGCCATCTGAGACGCCATCGGAGATGCTCCACGAGCTGGCCGATGGGCAGGGGCAGCAGCAGCCAGTTCCGGCGGTGTTCATAGATGGAAATTTCTTGGGAGGCGACTCTTGCCATGAGGGACCTCATACAGAAGCAGAGGCATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

263

Amino Acids

29.2

Weight (kDa)

5.71

Isoelectric Point (pI)

54.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	99 - 204	2.1e-06	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	676
AciI	CCGC	6 cut(s)	59, 62, 84, 263, 492, 713
AclWI	GGATC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	237, 582, 730
AcyI	GRCGYC	2 cut(s)	452, 653
AfiI	CCNNNNNNNGG	2 cut(s)	105, 676
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	41, 140, 185, 196, 205, 551
AluBI	AGCT	5 cut(s)	179, 188, 462, 627, 676
AluI	AGCT	5 cut(s)	179, 188, 462, 627, 676
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	443, 644
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	3 cut(s)	473, 489, 678
ApeKI	GCWGC	4 cut(s)	624, 694, 697, 700
ApoI	RAATTY	3 cut(s)	237, 582, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	21, 334, 761
AsuHPI	GGTGA	6 cut(s)	58, 83, 298, 340, 408, 548
AvaII	GGWCC	3 cut(s)	21, 334, 761
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	4 cut(s)	636, 706, 709, 712
BccI	CCATC	6 cut(s)	142, 315, 652, 664, 677, 719
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	443, 644
BfaI	CTAG	4 cut(s)	18, 342, 396, 459
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	7 cut(s)	60, 264, 492, 625, 695, 698, 701
BlsI	GCNGC	7 cut(s)	61, 265, 493, 626, 696, 699, 702
Bme18I	GGWCC	3 cut(s)	21, 334, 761
BmgT120I	GGNCC	3 cut(s)	21, 334, 761
BmiI	GGNNCC	3 cut(s)	267, 403, 762
BmsI	GCATC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	2 cut(s)	452, 653
BsaJI	CCNNGG	2 cut(s)	24, 390
BsaWI	WCCGGW	2 cut(s)	160, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 676
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	619
BseDI	CCNNGG	2 cut(s)	24, 390
BseGI	GGATG	5 cut(s)	114, 153, 285, 436, 535
BseLI	CCNNNNNNNGG	2 cut(s)	105, 676
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	4 cut(s)	636, 706, 709, 712
Bsh1285I	CGRYCG	2 cut(s)	170, 372
BshFI	GGCC	3 cut(s)	475, 491, 680
BshNI	GGYRCC	1 cut(s)	265
BshTI	ACCGGT	1 cut(s)	160
BsiEI	CGRYCG	2 cut(s)	170, 372
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	161, 368, 710
BslFI	GGGAC	2 cut(s)	495, 774
BslI	CCNNNNNNNGG	2 cut(s)	105, 676
BsmAI	GTCTC	2 cut(s)	443, 644
BsmBI	CGTCTC	2 cut(s)	443, 644
BsmFI	GGGAC	2 cut(s)	495, 774
BsnI	GGCC	3 cut(s)	475, 491, 680
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	152
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	6 cut(s)	59, 62, 84, 263, 492, 713
BspANI	GGCC	3 cut(s)	475, 491, 680
BspCNI	CTCAG	1 cut(s)	640
BspHI	TCATGA	2 cut(s)	124, 310
BspLI	GGNNCC	3 cut(s)	267, 403, 762
BspPI	GGATC	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	619
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	704
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	24, 390
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	2 cut(s)	452, 653
BssSI	CACGAG	1 cut(s)	671
BssT1I	CCWWGG	2 cut(s)	24, 390
Bst2BI	CACGAG	1 cut(s)	671
Bst4CI	ACNGT	2 cut(s)	70, 171
Bst6I	CTCTTC	3 cut(s)	186, 429, 606
BstACI	GRCGYC	2 cut(s)	452, 653
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	4 cut(s)	104, 291, 599, 648
BstDSI	CCRYGG	1 cut(s)	390
BstEII	GGTNACC	1 cut(s)	64
BstF5I	GGATG	5 cut(s)	114, 153, 285, 436, 535
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	443, 644
BstMBI	GATC	1 cut(s)	152
BstMCI	CGRYCG	2 cut(s)	170, 372
BstMWI	GCNNNNNNNGC	7 cut(s)	185, 500, 560, 673, 694, 700, 750
BstPI	GGTNACC	1 cut(s)	64
BstV1I	GCAGC	4 cut(s)	636, 706, 709, 712
BstXI	CCANNNNNNTGG	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	3 cut(s)	475, 491, 680
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	5 cut(s)	114, 153, 285, 436, 535
Cac8I	GCNNGC	1 cut(s)	678
CciI	TCATGA	2 cut(s)	124, 310
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	3 cut(s)	21, 334, 761
CseI	GACGC	2 cut(s)	460, 661
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	6 cut(s)	54, 125, 311, 391, 635, 755
DdeI	CTNAG	4 cut(s)	104, 291, 599, 648
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	678
Eam1104I	CTCTTC	3 cut(s)	186, 429, 606
EarI	CTCTTC	3 cut(s)	186, 429, 606
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	24, 390
Eco24I	GRGCYC	1 cut(s)	181
Eco47I	GGWCC	3 cut(s)	21, 334, 761
Eco53kI	GAGCTC	1 cut(s)	179
Eco91I	GGTNACC	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	24, 390
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	2 cut(s)	24, 390
Esp3I	CGTCTC	2 cut(s)	443, 644
FaeI	CATG	6 cut(s)	57, 128, 314, 394, 638, 758
FaqI	GGGAC	2 cut(s)	495, 774
FatI	CATG	6 cut(s)	53, 124, 310, 390, 634, 754
Fnu4HI	GCNGC	7 cut(s)	60, 264, 492, 625, 695, 698, 701
FokI	GGATG	5 cut(s)	121, 160, 292, 443, 542
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	7 cut(s)	60, 264, 492, 625, 695, 698, 701
FspBI	CTAG	4 cut(s)	18, 342, 396, 459
GluI	GCNGC	7 cut(s)	60, 264, 492, 625, 695, 698, 701
HaeIII	GGCC	3 cut(s)	475, 491, 680
HapII	CCGG	3 cut(s)	161, 368, 710
HgaI	GACGC	2 cut(s)	460, 661
Hin1I	GRCGYC	2 cut(s)	452, 653
Hin1II	CATG	6 cut(s)	57, 128, 314, 394, 638, 758
HinfI	GANTC	6 cut(s)	8, 50, 413, 539, 595, 746
HpaII	CCGG	3 cut(s)	161, 368, 710
HphI	GGTGA	6 cut(s)	58, 83, 298, 340, 408, 548
Hpy188I	TCNGA	4 cut(s)	13, 571, 649, 661
Hpy188III	TCNNGA	2 cut(s)	125, 311
HpyAV	CCTTC	4 cut(s)	110, 325, 465, 501
HpyCH4III	ACNGT	2 cut(s)	70, 171
HpyCH4V	TGCA	4 cut(s)	233, 356, 624, 638
HpyF10VI	GCNNNNNNNGC	7 cut(s)	185, 500, 560, 673, 694, 700, 750
HpyF3I	CTNAG	4 cut(s)	104, 291, 599, 648
Hsp92I	GRCGYC	2 cut(s)	452, 653
Hsp92II	CATG	6 cut(s)	57, 128, 314, 394, 638, 758
Kzo9I	GATC	1 cut(s)	152
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	2 cut(s)	176, 672
LpnPI	CCDG	6 cut(s)	174, 381, 662, 674, 717, 723
Lsp1109I	GCAGC	4 cut(s)	636, 706, 709, 712
LweI	GCATC	1 cut(s)	654
MaeI	CTAG	4 cut(s)	18, 342, 396, 459
MaeIII	GTNAC	2 cut(s)	64, 286
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	5 cut(s)	173, 217, 220, 446, 623
MfeI	CAATTG	2 cut(s)	274, 420
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	8 cut(s)	41, 142, 237, 274, 299, 420, 582, 730
MlyI	GAGTC	2 cut(s)	17, 740
MmeI	TCCRAC	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	299
MspI	CCGG	3 cut(s)	161, 368, 710
MunI	CAATTG	2 cut(s)	274, 420
MwoI	GCNNNNNNNGC	7 cut(s)	185, 500, 560, 673, 694, 700, 750
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	6 cut(s)	57, 128, 314, 394, 638, 758
NlaIV	GGNNCC	3 cut(s)	267, 403, 762
NmuCI	GTSAC	2 cut(s)	64, 286
PagI	TCATGA	2 cut(s)	124, 310
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	2 cut(s)	567, 678
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	4 cut(s)	50, 413, 539, 595
PflMI	CCANNNNNTGG	1 cut(s)	676
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	61, 265, 493, 626, 696, 699, 702
PleI	GAGTC	2 cut(s)	16, 740
PpsI	GAGTC	2 cut(s)	16, 740
PpuMI	RGGWCCY	1 cut(s)	761
PsiI	TTATAA	1 cut(s)	787
Psp124BI	GAGCTC	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	761
PspEI	GGTNACC	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	267, 403, 762
PspPI	GGNCC	3 cut(s)	21, 334, 761
PspPPI	RGGWCCY	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	186
SatI	GCNGC	7 cut(s)	60, 264, 492, 625, 695, 698, 701
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	3 cut(s)	21, 334, 761
SchI	GAGTC	2 cut(s)	17, 740
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	654
SinI	GGWCC	3 cut(s)	21, 334, 761
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	8 cut(s)	41, 142, 237, 274, 299, 420, 582, 730
SsiI	CCGC	6 cut(s)	59, 62, 84, 263, 492, 713
SspMI	CTAG	4 cut(s)	18, 342, 396, 459
SstI	GAGCTC	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	24, 390
TaaI	ACNGT	2 cut(s)	70, 171
TaqI	TCGA	2 cut(s)	166, 303
TasI	AATT	8 cut(s)	41, 142, 237, 274, 299, 420, 582, 730
TauI	GCSGC	3 cut(s)	62, 266, 494
TfiI	GAWTC	4 cut(s)	50, 413, 539, 595
TseFI	GTSAC	2 cut(s)	64, 286
TseI	GCWGC	4 cut(s)	624, 694, 697, 700
Tsp45I	GTSAC	2 cut(s)	64, 286
TspDTI	ATGAA	5 cut(s)	113, 141, 327, 447, 709
Van91I	CCANNNNNTGG	1 cut(s)	676
VpaK11BI	GGWCC	3 cut(s)	21, 334, 761
XapI	RAATTY	3 cut(s)	237, 582, 730
XmnI	GAANNNNTTC	1 cut(s)	299
XspI	CTAG	4 cut(s)	18, 342, 396, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.