MD12G1048200.v1.1

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000206
Physical Location & Seq
Forward (+)
5478688 .. 5480352
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1048200.v1.1.491

Sequence Viewer

Length: 603 bp
ATGAACAGCACCCCTCTACACTCTACACCTGAGCATGCCTCGCATGATCATGATGAAGATGATGAAGAAGTGCTTGAAACGCCCCCCGTTGAACAAGCGTCGGGGTCGACCCGTTATCCAATTAGGCCTCAAGGTAAGAAGGCTTCAAAGAGAAAAGGTAATGCTTCCAAGAATGATTATGCAAAGTATATGGAAGATCTTGCCCGCCAAGGTGAATTGAATTTGGCCCGGGAAATGGCTAAATTTGAGGCTGATAAGGCTAGAGAGGATGCAAAAGCTGCAGCTTTTGAGAGAAAATTTGAAGCTGATGAGAGAGAAAGAGAACTACTTCGGCAAGAAAGGGAACATAGAAGAGAAGAAAGAATGGCTGAACGAGATCGTGACATTATGAAGGAGCCTTTAGAAGGGAAGTCTCCAGACTCTAAATATTTTTGGAAGTCAGAGAAAGCGGATGTGGTGCGAAGGATGCGTGCAAGAGAAGCGAGAGCAAGAGGAGATGGTCCTAGCACCACAAGAGAAGATTATCCTAGCATGACAAGAGAAGATCATCCTAGCACCACAAATTGGTTAGGTGATGGTTATCATCCATTCACGAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 Ank_5 PGG

Protein Analysis

201

Amino Acids

23.28

Weight (kDa)

5.89

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 564
AccI GTMKAC 1 cut(s) 107
AciI CCGC 2 cut(s) 205, 449
AcsI RAATTY 3 cut(s) 220, 242, 296
AfiI CCNNNNNNNGG 3 cut(s) 235, 404, 564
AgsI TTSAA 5 cut(s) 77, 92, 147, 220, 302
AluBI AGCT 3 cut(s) 278, 284, 305
AluI AGCT 3 cut(s) 278, 284, 305
Alw26I GTCTC 1 cut(s) 417
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 2 cut(s) 125, 225
ApeKI GCWGC 2 cut(s) 278, 281
ApoI RAATTY 3 cut(s) 220, 242, 296
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 226, 500
AsuC2I CCSGG 2 cut(s) 229, 230
AsuHPI GGTGA 2 cut(s) 224, 584
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 500
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbvI GCAGC 2 cut(s) 265, 293
BccI CCATC 2 cut(s) 491, 569
BclI TGATCA 1 cut(s) 46
BcnI CCSGG 2 cut(s) 229, 230
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 4 cut(s) 261, 504, 528, 552
BfmI CTRYAG 1 cut(s) 279
BglII AGATCT 1 cut(s) 196
BisI GCNGC 2 cut(s) 279, 282
BlsI GCNGC 2 cut(s) 280, 283
Bme1390I CCNGG 2 cut(s) 229, 230
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 2 cut(s) 226, 500
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 2 cut(s) 229, 230
BmsI GCATC 2 cut(s) 259, 456
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpmI CTGGAG 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 114
BpuMI CCSGG 2 cut(s) 229, 230
BsaBI GATNNNNATC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 208, 228
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 404, 564
Bse8I GATNNNNATC 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 208, 228
BseGI GGATG 5 cut(s) 274, 457, 471, 547, 583
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 3 cut(s) 235, 404, 564
BseMII CTCAG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 507
BseXI GCAGC 2 cut(s) 265, 293
BshFI GGCC 2 cut(s) 127, 227
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 3 cut(s) 235, 404, 564
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 127, 227
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 4 cut(s) 46, 196, 376, 544
BspACI CCGC 2 cut(s) 205, 449
BspANI GGCC 2 cut(s) 127, 227
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 208, 228
BssMI GATC 4 cut(s) 46, 196, 376, 544
BssT1I CCWWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 346
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 36, 205, 471
BstDEI CTNAG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 5 cut(s) 274, 457, 471, 547, 583
BstKTI GATC 4 cut(s) 49, 199, 379, 547
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 46, 196, 376, 544
BstMWI GCNNNNNNNGC 6 cut(s) 40, 79, 257, 278, 466, 479
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 227, 228
BstSFI CTRYAG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 265, 293
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 127, 227
BtsCI GGATG 5 cut(s) 274, 457, 471, 547, 583
Cac8I GCNNGC 3 cut(s) 36, 205, 471
CciI TCATGA 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 226, 500
Cfr9I CCCGGG 1 cut(s) 228
CseI GACGC 1 cut(s) 87
CviAII CATG 4 cut(s) 35, 44, 50, 532
DdeI CTNAG 1 cut(s) 30
DpnI GATC 4 cut(s) 48, 198, 378, 546
DpnII GATC 4 cut(s) 46, 196, 376, 544
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 4 cut(s) 38, 47, 53, 535
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FatI CATG 4 cut(s) 34, 43, 49, 531
FauI CCCGC 1 cut(s) 212
FbaI TGATCA 1 cut(s) 46
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 2 cut(s) 279, 282
FokI GGATG 5 cut(s) 281, 464, 478, 534, 570
Fsp4HI GCNGC 2 cut(s) 279, 282
FspBI CTAG 4 cut(s) 261, 504, 528, 552
GluI GCNGC 2 cut(s) 279, 282
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 127, 227
HapII CCGG 1 cut(s) 229
HgaI GACGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 38, 47, 53, 535
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 1 cut(s) 419
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 224, 584
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 4 cut(s) 50, 380, 416, 592
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 133, 385, 398, 456
HpyCH4V TGCA 4 cut(s) 182, 272, 281, 473
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 79, 257, 278, 466, 479
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 4 cut(s) 38, 47, 53, 535
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 46, 196, 376, 544
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 3 cut(s) 42, 242, 429
Lsp1109I GCAGC 2 cut(s) 265, 293
LweI GCATC 2 cut(s) 259, 456
MaeI CTAG 4 cut(s) 261, 504, 528, 552
MaeIII GTNAC 1 cut(s) 380
MalI GATC 4 cut(s) 48, 198, 378, 546
MboI GATC 4 cut(s) 46, 196, 376, 544
MboII GAAGA 7 cut(s) 68, 77, 206, 363, 368, 530, 554
MflI RGATCY 1 cut(s) 196
MluCI AATT 6 cut(s) 120, 215, 220, 242, 296, 562
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 6 cut(s) 24, 49, 138, 241, 259, 485
MroXI GAANNNNTTC 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 48
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 2 cut(s) 229, 230
MwoI GCNNNNNNNGC 6 cut(s) 40, 79, 257, 278, 466, 479
NciI CCSGG 2 cut(s) 229, 230
NdeII GATC 4 cut(s) 46, 196, 376, 544
NlaIII CATG 4 cut(s) 38, 47, 53, 535
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PagI TCATGA 1 cut(s) 49
PceI AGGCCT 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 564
PkrI GCNGC 2 cut(s) 280, 283
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 226, 500
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 48
SalI GTCGAC 1 cut(s) 106
SatI GCNGC 2 cut(s) 279, 282
Sau3AI GATC 4 cut(s) 46, 196, 376, 544
Sau96I GGNCC 2 cut(s) 226, 500
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 229, 230
SetI ASST 8 cut(s) 31, 136, 160, 214, 280, 286, 307, 574
SfaNI GCATC 2 cut(s) 259, 456
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 500
SmaI CCCGGG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 38
Sse9I AATT 6 cut(s) 120, 215, 220, 242, 296, 562
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 2 cut(s) 205, 449
SspI AATATT 1 cut(s) 428
SspMI CTAG 4 cut(s) 261, 504, 528, 552
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 227, 228
StyI CCWWGG 1 cut(s) 208
TaqI TCGA 1 cut(s) 107
TasI AATT 6 cut(s) 120, 215, 220, 242, 296, 562
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 278, 281
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 4 cut(s) 17, 69, 78, 404
TspMI CCCGGG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 564
VpaK11BI GGWCC 1 cut(s) 500
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 3 cut(s) 220, 242, 296
XceI RCATGY 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 4 cut(s) 261, 504, 528, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.