Rmu_sc0003018.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003018.1
OG0000206
Physical Location & Seq
Forward (+)
11796 .. 12182
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003018.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atggatccaccaagaacccctcctcggccgacatttagctctaaagagatggattccaccactaacttgggtgaggatgaagttttggagacaccaccgagtccatctgtaaggcctcctggaataaaggcttcaaaagaagcaataaggaaagggaagaagaagcaagagaaagatgattgtgtagcaattgcagttgaaagtcttgctcgatccaccgctgctacagttgatctaattaggcaaagagatgaggatgctcgaaagcacgcagcaaaagttttagcacttgagcgaaaaagaatacacacgaattatgtctatcgatacttctgcaatgactccggaatcaaagaaatggtggaaaagaaggaaggctgtgattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

8.76

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 1 cut(s) 219
AclWI GGATC 2 cut(s) 12, 207
AcoI YGGCCR 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 2 cut(s) 135, 200
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 2 cut(s) 12, 207
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 2 cut(s) 26, 113
ApeKI GCWGC 2 cut(s) 221, 272
AsuHPI GGTGA 1 cut(s) 83
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 208, 284
BccI CCATC 2 cut(s) 43, 112
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 2 cut(s) 222, 273
BlsI GCNGC 2 cut(s) 223, 274
Bme1390I CCNGG 1 cut(s) 120
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 311
Bsa29I ATCGAT 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 1 cut(s) 344
BseBI CCWGG 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 82, 262
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 12
BseX3I CGGCCG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 208, 284
Bsh1285I CGRYCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 28, 115
BshVI ATCGAT 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 2 cut(s) 28, 115
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 3 cut(s) 4, 212, 232
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 28, 115
BspDI ATCGAT 1 cut(s) 325
BspEI TCCGGA 1 cut(s) 344
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 207
BsrDI GCAATG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 3 cut(s) 4, 212, 232
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 2 cut(s) 82, 262
BstKTI GATC 3 cut(s) 7, 215, 235
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 4, 212, 232
BstMCI CGRYCG 1 cut(s) 29
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 225
BstV1I GCAGC 2 cut(s) 208, 284
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 325
BsuRI GGCC 2 cut(s) 28, 115
BsuTUI ATCGAT 1 cut(s) 325
BtsCI GGATG 2 cut(s) 82, 262
Cac8I GCNNGC 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 325
CviJI RGCY 5 cut(s) 28, 39, 115, 131, 378
CviKI_1 RGCY 5 cut(s) 28, 39, 115, 131, 378
DpnI GATC 3 cut(s) 6, 214, 234
DpnII GATC 3 cut(s) 4, 212, 232
EaeI YGGCCR 1 cut(s) 26
EagI CGGCCG 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 222, 273
FokI GGATG 2 cut(s) 89, 269
Fsp4HI GCNGC 2 cut(s) 222, 273
GluI GCNGC 2 cut(s) 222, 273
HaeIII GGCC 2 cut(s) 28, 115
HapII CCGG 1 cut(s) 345
HinfI GANTC 4 cut(s) 53, 100, 341, 348
HpaII CCGG 1 cut(s) 345
HphI GGTGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 364, 368
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 194, 336
Kpn2I TCCGGA 1 cut(s) 344
Kzo9I GATC 3 cut(s) 4, 212, 232
LpnPI CCDG 3 cut(s) 105, 132, 358
Lsp1109I GCAGC 2 cut(s) 208, 284
LweI GCATC 1 cut(s) 247
MalI GATC 3 cut(s) 6, 214, 234
MboI GATC 3 cut(s) 4, 212, 232
MboII GAAGA 2 cut(s) 169, 172
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 189, 237, 313
MlyI GAGTC 2 cut(s) 109, 335
MnlI CCTC 5 cut(s) 30, 33, 67, 126, 247
MroI TCCGGA 1 cut(s) 344
MseI TTAA 1 cut(s) 385
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 120
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 120
NdeII GATC 3 cut(s) 4, 212, 232
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 4
PceI AGGCCT 1 cut(s) 115
PfeI GAWTC 2 cut(s) 53, 348
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 2 cut(s) 223, 274
PleI GAGTC 2 cut(s) 108, 335
PpsI GAGTC 2 cut(s) 108, 335
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 1 cut(s) 385
SatI GCNGC 2 cut(s) 222, 273
Sau3AI GATC 3 cut(s) 4, 212, 232
SchI GAGTC 2 cut(s) 109, 335
ScrFI CCNGG 1 cut(s) 120
SetI ASST 1 cut(s) 41
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 3 cut(s) 189, 237, 313
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 219
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 3 cut(s) 211, 262, 325
TasI AATT 3 cut(s) 189, 237, 313
TfiI GAWTC 2 cut(s) 53, 348
Tru1I TTAA 1 cut(s) 385
Tru9I TTAA 1 cut(s) 385
TseI GCWGC 2 cut(s) 221, 272
TspDTI ATGAA 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.