pycom05g00050

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
102402 .. 103060
659 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g00050.1

Sequence Viewer

Length: 471 bp
ATGTATATGGAAAAGATGCCAGATCGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACACCATCTCTCATACTTTTGGTAATCTGCGTAGTGGGACAAGTTTAGCGAATCAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCGTAACAAGTCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCCTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTTGCCAGAAGCAGACACGGCCGAACAAGAAGCCAACACATTTGAAGACACAGAAGGGACGCCTAAAGAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTTAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAGGTAGTTCTTCCAAAAATGACTACACTAAATATATGGAGTAA

Protein Analysis

157

Amino Acids

17.76

Weight (kDa)

9.44

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 353
AgeI ACCGGT 1 cut(s) 254
AgsI TTSAA 3 cut(s) 44, 196, 338
Alw26I GTCTC 1 cut(s) 365
AoxI GGCC 2 cut(s) 312, 398
AsiGI ACCGGT 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 257
AxyI CCTNAGG 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 32, 345
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 2 cut(s) 30, 234
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmsI GCATC 3 cut(s) 6, 77, 425
BpiI GAAGAC 2 cut(s) 32, 345
BpuEI CTTGAG 1 cut(s) 387
Bsa29I ATCGAT 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 365
BsaWI WCCGGW 1 cut(s) 254
Bse118I RCCGGY 1 cut(s) 254
Bse21I CCTNAGG 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 25
BseGI GGATG 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 314, 400
BshTI ACCGGT 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 3 cut(s) 139, 364, 376
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 3 cut(s) 139, 364, 376
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 314, 400
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 2 cut(s) 22, 26
BspANI GGCC 2 cut(s) 314, 400
BspDI ATCGAT 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 365
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssMI GATC 2 cut(s) 22, 26
BssNI GRCGYC 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 182, 278, 293
BstACI GRCGYC 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 2 cut(s) 25, 29
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 22, 26
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 32, 345
BstZI CGGCCG 1 cut(s) 312
Bsu15I ATCGAT 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 395
BsuRI GGCC 2 cut(s) 314, 400
BsuTUI ATCGAT 1 cut(s) 25
BtsCI GGATG 1 cut(s) 68
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 25
CseI GACGC 1 cut(s) 361
CspAI ACCGGT 1 cut(s) 254
CviAII CATG 1 cut(s) 271
CviJI RGCY 3 cut(s) 314, 326, 400
CviKI_1 RGCY 3 cut(s) 314, 326, 400
DdeI CTNAG 1 cut(s) 395
DpnI GATC 2 cut(s) 24, 28
DpnII GATC 2 cut(s) 22, 26
DrdI GACNNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 388
EaeI YGGCCR 1 cut(s) 312
EagI CGGCCG 1 cut(s) 312
EclXI CGGCCG 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 257
Eco52I CGGCCG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 395
FaeI CATG 1 cut(s) 274
FaiI YATR 7 cut(s) 6, 8, 102, 272, 281, 462, 464
FaqI GGGAC 3 cut(s) 139, 364, 376
FatI CATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 286
FokI GGATG 1 cut(s) 55
FspBI CTAG 2 cut(s) 30, 234
HaeIII GGCC 2 cut(s) 314, 400
HapII CCGG 1 cut(s) 255
HgaI GACGC 1 cut(s) 361
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 274
HinfI GANTC 2 cut(s) 139, 382
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 182, 278, 293
HpyCH4V TGCA 2 cut(s) 173, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 1 cut(s) 395
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 274
Kzo9I GATC 2 cut(s) 22, 26
LpnPI CCDG 5 cut(s) 33, 268, 273, 312, 381
LweI GCATC 3 cut(s) 6, 77, 425
MaeI CTAG 2 cut(s) 30, 234
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 24, 28
MboI GATC 2 cut(s) 22, 26
MboII GAAGA 3 cut(s) 32, 350, 429
MluCI AATT 2 cut(s) 216, 243
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 2 cut(s) 32, 62
MnlI CCTC 1 cut(s) 411
MspI CCGG 1 cut(s) 255
Mva1269I GAATGC 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeII GATC 2 cut(s) 22, 26
NlaIII CATG 1 cut(s) 274
PceI AGGCCT 1 cut(s) 400
PctI GAATGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 254
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 22, 26
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 376
SetI ASST 4 cut(s) 40, 49, 409, 433
SfaNI GCATC 3 cut(s) 6, 77, 425
SinI GGWCC 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 2 cut(s) 216, 243
SseBI AGGCCT 1 cut(s) 400
SspMI CTAG 2 cut(s) 30, 234
StuI AGGCCT 1 cut(s) 400
TaaI ACNGT 3 cut(s) 182, 278, 293
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 216, 243
TfiI GAWTC 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 286
XspI CTAG 2 cut(s) 30, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.