Rmu_sc0000857.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000857.1
OG0000206
Physical Location & Seq
Forward (+)
96669 .. 102438
5770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000857.1_g000019.1.cds

Sequence Viewer

Length: 867 bp
atggttccaaaggaagttctcttgggacagtggtactcaaggtcttggtggatggttcgacggtttccagtcaaacagatgtgttgcatgacatgtattagggtgaaccaaagccggtgtgcttcgggttttcttggctttccagttttggtccttggtggtcggaattgctttattaacggcaccggagatctgtggtggcgctggatcagcagcgacgctgggtcaaggtgggattgctgtatggaccttatcagagctcttagagcaaatgcaccagcataccaattggatgaccaattggagagaaagaaggaaaagtggaatgcagcggcaataaattgccggactgatttgcagtttgttgggggccccacctgcccaggcaattggatgaccaaggatcagcaaatggattgcccgaccgttggtggtgggctccacacccacatggctactgcctctgaaaatgagtctccaattgagttggatgatgatattgtttcggagacaccatcaagctccatgccaagaccaatgggacaaaagagagccaaagaagcaaaaaagaaaggaaagaaggcgcaagatgcagctgaaagtatggctcttgctattcaagccatggccgaatcaacccaagcttctgttgagctagtgaagaaaagaaacgaagaaatggctgctcacacaaagaaggtatttgaatttgaagaggagaaagaagatgcaagaattatggccatggatactaattccatgacaccacaatcaaaggcttggtggaaaaagaagaagggtgatatcgtagcaaaaacaatgtctgatggtggtagtagcggttgctatataccccaattcgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.31

Weight (kDa)

8.43

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 2 cut(s) 332, 840
AclWI GGATC 2 cut(s) 215, 411
AcoI YGGCCR 2 cut(s) 627, 741
AcsI RAATTY 1 cut(s) 707
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 3 cut(s) 620, 707, 713
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 5 cut(s) 260, 522, 596, 644, 655
AluI AGCT 5 cut(s) 260, 522, 596, 644, 655
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 480, 503
AlwI GGATC 2 cut(s) 215, 411
AoxI GGCC 3 cut(s) 370, 627, 741
ApaI GGGCCC 1 cut(s) 374
ApeKI GCWGC 4 cut(s) 213, 329, 593, 683
ApoI RAATTY 1 cut(s) 707
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AspLEI GCGC 2 cut(s) 204, 586
AspS9I GGNCC 4 cut(s) 151, 247, 370, 371
AsuHPI GGTGA 2 cut(s) 115, 812
AvaII GGWCC 2 cut(s) 151, 247
BaeGI GKGCMC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 743
BanI GGYRCC 1 cut(s) 182
BanII GRGCYC 3 cut(s) 262, 374, 441
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 4 cut(s) 225, 341, 605, 670
BccI CCATC 3 cut(s) 46, 523, 821
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 384
BciVI GTATCC 1 cut(s) 742
BcoDI GTCTC 2 cut(s) 480, 503
BfaI CTAG 1 cut(s) 656
BfoI RGCGCY 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 386
BfuI GTATCC 1 cut(s) 742
BglII AGATCT 1 cut(s) 190
BisI GCNGC 5 cut(s) 214, 330, 333, 594, 684
BlsI GCNGC 5 cut(s) 215, 331, 334, 595, 685
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 151, 247
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 4 cut(s) 151, 247, 370, 371
BmiI GGNNCC 6 cut(s) 6, 184, 371, 372, 373, 440
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 2 cut(s) 580, 718
BpuEI CTTGAG 1 cut(s) 22
BsaJI CCNNGG 5 cut(s) 154, 382, 399, 624, 744
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 68, 143
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 5 cut(s) 154, 382, 399, 624, 744
BseGI GGATG 4 cut(s) 57, 298, 399, 496
BseLI CCNNNNNNNGG 1 cut(s) 428
BseNI ACTGG 2 cut(s) 68, 143
BseRI GAGGAG 1 cut(s) 731
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 4 cut(s) 225, 341, 605, 670
BseYI CCCAGC 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 3 cut(s) 372, 629, 743
BshNI GGYRCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 3 cut(s) 115, 186, 346
BslFI GGGAC 2 cut(s) 39, 555
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 480, 503
BsmFI GGGAC 2 cut(s) 39, 555
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 3 cut(s) 372, 629, 743
Bsp120I GGGCCC 1 cut(s) 370
Bsp1286I GDGCHC 3 cut(s) 262, 374, 441
Bsp143I GATC 3 cut(s) 190, 207, 403
Bsp19I CCATGG 2 cut(s) 624, 744
BspACI CCGC 2 cut(s) 332, 840
BspANI GGCC 3 cut(s) 372, 629, 743
BspLI GGNNCC 6 cut(s) 6, 184, 371, 372, 373, 440
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 2 cut(s) 215, 411
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 2 cut(s) 68, 143
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 5 cut(s) 154, 382, 399, 624, 744
BssMI GATC 3 cut(s) 190, 207, 403
BssT1I CCWWGG 4 cut(s) 154, 399, 624, 744
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 30, 63, 427
Bst6I CTCTTC 1 cut(s) 708
BstDEI CTNAG 1 cut(s) 263
BstDSI CCRYGG 2 cut(s) 624, 744
BstF5I GGATG 4 cut(s) 57, 298, 399, 496
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 204, 586
BstKTI GATC 3 cut(s) 193, 210, 406
BstMAI GTCTC 2 cut(s) 480, 503
BstMBI GATC 3 cut(s) 190, 207, 403
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 6 cut(s) 210, 266, 378, 560, 590, 620
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 4 cut(s) 225, 341, 605, 670
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 390
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 3 cut(s) 372, 629, 743
BtgI CCRYGG 2 cut(s) 624, 744
BtsCI GGATG 4 cut(s) 57, 298, 399, 496
BtsIMutI CAGTG 1 cut(s) 35
BveI ACCTGC 1 cut(s) 386
CfoI GCGC 2 cut(s) 204, 586
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 4 cut(s) 151, 247, 370, 371
CseI GACGC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 34
CviAII CATG 7 cut(s) 88, 93, 451, 526, 625, 745, 760
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 263
DpnI GATC 3 cut(s) 192, 209, 405
DpnII GATC 3 cut(s) 190, 207, 403
DriI GACNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 627, 741
Eam1104I CTCTTC 1 cut(s) 708
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 708
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 4 cut(s) 154, 399, 624, 744
Eco24I GRGCYC 3 cut(s) 262, 374, 441
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 151, 247
Eco53kI GAGCTC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 370, 371
EcoRII CCWGG 1 cut(s) 382
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 4 cut(s) 154, 399, 624, 744
EcoT38I GRGCYC 3 cut(s) 262, 374, 441
ErhI CCWWGG 4 cut(s) 154, 399, 624, 744
FaeI CATG 7 cut(s) 91, 96, 454, 529, 628, 748, 763
FaqI GGGAC 2 cut(s) 39, 555
FatI CATG 7 cut(s) 87, 92, 450, 525, 624, 744, 759
Fnu4HI GCNGC 5 cut(s) 214, 330, 333, 594, 684
FokI GGATG 4 cut(s) 64, 305, 406, 503
FriOI GRGCYC 3 cut(s) 262, 374, 441
Fsp4HI GCNGC 5 cut(s) 214, 330, 333, 594, 684
FspBI CTAG 1 cut(s) 656
GlaI GCGC 2 cut(s) 203, 585
GluI GCNGC 5 cut(s) 214, 330, 333, 594, 684
GsaI CCCAGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 3 cut(s) 372, 629, 743
HapII CCGG 3 cut(s) 115, 186, 346
HgaI GACGC 1 cut(s) 227
HhaI GCGC 2 cut(s) 204, 586
Hin1II CATG 7 cut(s) 91, 96, 454, 529, 628, 748, 763
Hin6I GCGC 2 cut(s) 202, 584
HinP1I GCGC 2 cut(s) 202, 584
HindIII AAGCTT 1 cut(s) 642
HinfI GANTC 2 cut(s) 473, 632
HpaII CCGG 3 cut(s) 115, 186, 346
HphI GGTGA 2 cut(s) 115, 812
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 5 cut(s) 165, 257, 466, 508, 826
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 63, 221
HpyAV CCTTC 4 cut(s) 307, 574, 691, 790
HpyCH4III ACNGT 3 cut(s) 30, 63, 427
HpyCH4V TGCA 6 cut(s) 87, 275, 329, 358, 593, 731
HpyF10VI GCNNNNNNNGC 6 cut(s) 210, 266, 378, 560, 590, 620
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 7 cut(s) 91, 96, 454, 529, 628, 748, 763
HspAI GCGC 2 cut(s) 202, 584
Kzo9I GATC 3 cut(s) 190, 207, 403
LmnI GCTCC 2 cut(s) 444, 527
Lsp1109I GCAGC 4 cut(s) 225, 341, 605, 670
LweI GCATC 2 cut(s) 580, 718
MaeI CTAG 1 cut(s) 656
MalI GATC 3 cut(s) 192, 209, 405
MboI GATC 3 cut(s) 190, 207, 403
MboII GAAGA 5 cut(s) 673, 686, 725, 737, 805
MfeI CAATTG 4 cut(s) 287, 299, 388, 480
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 262, 374, 441
MlsI TGGCCA 1 cut(s) 743
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 143, 468
MnlI CCTC 2 cut(s) 472, 709
Mox20I TGGCCA 1 cut(s) 743
MscI TGGCCA 1 cut(s) 743
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 449
Msp20I TGGCCA 1 cut(s) 743
MspA1I CMGCKG 2 cut(s) 332, 596
MspI CCGG 3 cut(s) 115, 186, 346
MspR9I CCNGG 1 cut(s) 384
MunI CAATTG 4 cut(s) 287, 299, 388, 480
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 384
MwoI GCNNNNNNNGC 6 cut(s) 210, 266, 378, 560, 590, 620
NcoI CCATGG 2 cut(s) 624, 744
NdeII GATC 3 cut(s) 190, 207, 403
NlaIII CATG 7 cut(s) 91, 96, 454, 529, 628, 748, 763
NlaIV GGNNCC 6 cut(s) 6, 184, 371, 372, 373, 440
NspI RCATGY 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 386
PciI ACATGT 1 cut(s) 92
PctI GAATGC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 632
PkrI GCNGC 5 cut(s) 215, 331, 334, 595, 685
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PscI ACATGT 1 cut(s) 92
Psp124BI GAGCTC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 382
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 6 cut(s) 6, 184, 371, 372, 373, 440
PspOMI GGGCCC 1 cut(s) 370
PspPI GGNCC 4 cut(s) 151, 247, 370, 371
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 449
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 5 cut(s) 214, 330, 333, 594, 684
Sau3AI GATC 3 cut(s) 190, 207, 403
Sau96I GGNCC 4 cut(s) 151, 247, 370, 371
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 3 cut(s) 262, 374, 441
SfaNI GCATC 2 cut(s) 580, 718
SinI GGWCC 2 cut(s) 151, 247
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SsiI CCGC 2 cut(s) 332, 840
SspMI CTAG 1 cut(s) 656
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 4 cut(s) 154, 399, 624, 744
TaaI ACNGT 3 cut(s) 30, 63, 427
TaqI TCGA 2 cut(s) 58, 861
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 35
TseI GCWGC 4 cut(s) 213, 329, 593, 683
TspRI CASTG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 151, 247
XapI RAATTY 1 cut(s) 707
XceI RCATGY 1 cut(s) 96
XspI CTAG 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.