Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000206

Physical Location & Seq

Genomic Coordinates Reverse (-)

23338827 .. 23339650

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGACTTCGTGGAAGCTCAGTGAAGATGTTACGTTGTGTGAATGTTGGGTTCGCACTACTCATGACCCGATTACGGGTAATGAGATGGATAAGCGAGAAATGTGGAGTAAAATTACGAAATCGTTTTGCGATGTACATGGAAAAGATGCCAGATCTAGTCAAGGTCTTCAAGGTCGTTGGAAAAAACTCAACGCATCCTTTACTTGTTGGAAAAACGCCATCTCTCATGCTTCTGGTAATCTGCGTAGTGGGACAAGTTTAGCGGATGAGACACTACAAGCACAAGCATTCTACAATGCAAAGAACCATAACAAATCATTCAACAAATGGGAATGTTGGCAAATTGTCAAAGATTGCCGTAGATACAAAATTGTGGCAACCGGTCCAGAAGTTGTCATGCACGGTATGGGTCTACACAGTTCGCCAGAAGCAGACACAGCCGAACAAGAAGCCAAGACATTTGAAGACACGGAAAGGACGCCTGAACAAGTGCCAGAGACCCAACCGACTCGTCAGTCCCTCAGGCCTCAAGGTAAAAAGGCATCAAAGAAAAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C TPR_2 TPR_8

Protein Analysis

187

Amino Acids

21.23

Weight (kDa)

9.14

Isoelectric Point (pI)

60.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000206)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica	MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis	pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis	RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata	RLG00000030820
rosa_multiflora	Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii	Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa	Rorug03G0276400 Rorug03G0276400
rosa_samantha	Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana	Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	514
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	73, 74
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	170, 322, 464
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	263, 491
AoxI	GGCC	1 cut(s)	524
AsiGI	ACCGGT	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	383
AxyI	CCTNAGG	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	158, 471
BccI	CCATC	2 cut(s)	79, 227
BceAI	ACGGC	1 cut(s)	342
BcoDI	GTCTC	2 cut(s)	263, 491
BfaI	CTAG	1 cut(s)	156
BglII	AGATCT	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmsI	GCATC	3 cut(s)	136, 203, 551
BpiI	GAAGAC	2 cut(s)	158, 471
BpuEI	CTTGAG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 74
Bse118I	RCCGGY	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	194, 271
BseLI	CCNNNNNNNGG	2 cut(s)	73, 74
BseMII	CTCAG	2 cut(s)	31, 535
BshFI	GGCC	1 cut(s)	526
BshTI	ACCGGT	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	265, 502
BslI	CCNNNNNNNGG	2 cut(s)	73, 74
BsmAI	GTCTC	2 cut(s)	263, 491
BsmFI	GGGAC	2 cut(s)	265, 502
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	526
Bso31I	GGTCTC	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	152
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	526
BspCNI	CTCAG	2 cut(s)	30, 534
BspHI	TCATGA	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	380
BsrGI	TGTACA	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	380
BssMI	GATC	1 cut(s)	152
BssNI	GRCGYC	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	404, 419
BstACI	GRCGYC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	17, 521
BstF5I	GGATG	2 cut(s)	194, 271
BstKTI	GATC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	263, 491
BstMBI	GATC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstV2I	GAAGAC	2 cut(s)	158, 471
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	526
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	2 cut(s)	194, 271
BtsIMutI	CAGTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	134
CspAI	ACCGGT	1 cut(s)	380
CviAII	CATG	4 cut(s)	62, 137, 227, 397
CviJI	RGCY	4 cut(s)	16, 440, 452, 526
CviKI_1	RGCY	4 cut(s)	16, 440, 452, 526
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	2 cut(s)	17, 521
DpnI	GATC	1 cut(s)	154
DpnII	GATC	1 cut(s)	152
DrdI	GACNNNNNNGTC	1 cut(s)	514
DseDI	GACNNNNNNGTC	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	383
Eco81I	CCTNAGG	1 cut(s)	521
FaeI	CATG	4 cut(s)	65, 140, 230, 400
FaiI	YATR	6 cut(s)	63, 138, 228, 309, 398, 407
FaqI	GGGAC	2 cut(s)	265, 502
FatI	CATG	4 cut(s)	61, 136, 226, 396
FblI	GTMKAC	1 cut(s)	412
FokI	GGATG	2 cut(s)	181, 278
FspBI	CTAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	526
HapII	CCGG	1 cut(s)	381
HgaI	GACGC	1 cut(s)	487
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	4 cut(s)	65, 140, 230, 400
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188III	TCNNGA	2 cut(s)	62, 386
Hpy8I	GTNNAC	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	404, 419
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	299, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	2 cut(s)	17, 521
HpySE526I	ACGT	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	4 cut(s)	65, 140, 230, 400
Kzo9I	GATC	1 cut(s)	152
LpnPI	CCDG	8 cut(s)	163, 219, 394, 399, 438, 495, 507, 508
LweI	GCATC	3 cut(s)	136, 203, 551
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	154
MboI	GATC	1 cut(s)	152
MboII	GAAGA	3 cut(s)	35, 158, 476
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	3 cut(s)	111, 342, 369
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	2 cut(s)	158, 188
MnlI	CCTC	2 cut(s)	530, 537
MspI	CCGG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	65, 140, 230, 400
PagI	TCATGA	1 cut(s)	61
PceI	AGGCCT	1 cut(s)	526
PctI	GAATGC	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	380
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
Sau3AI	GATC	1 cut(s)	152
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	1 cut(s)	502
SetI	ASST	6 cut(s)	18, 35, 166, 175, 535, 560
SfaNI	GCATC	3 cut(s)	136, 203, 551
SinI	GGWCC	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	528
SmoI	CTYRAG	1 cut(s)	528
Sse9I	AATT	3 cut(s)	111, 342, 369
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	404, 419
TaiI	ACGT	1 cut(s)	35
TasI	AATT	3 cut(s)	111, 342, 369
TatI	WGTACW	1 cut(s)	133
TscAI	CASTG	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	412
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.