RchiOBHm_Chr7g0226641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000206
Physical Location & Seq
Reverse (-)
49922855 .. 49924869
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20299

Sequence Viewer

Length: 483 bp
ATGGACAATCCTAATTCTTTATTAGCTTTCCGTGTTTGTTTGGAGTTTTATATACTAACCAATTTTGAATCGGAACTGTCATATACTTGTAGGTGCGAGAGTCTTCCTCTTCACCTTTTATCCCAAATTCCCAATCTCTCACGCCCTTTCTGTCACTTACAGCTTACTAAACCCCATAAACCCTTATCTGAAACCATATACCCAATAACCCAAACACCACTTTGTCATCTTACTCTTGCTGCTCTGATAAAGCTGAAGAAAGTCCTCCGGGAAGAAAGACTCAAAAGAGAGATGCTAAGCTCAAGGGGAAGATTAGCAAAAAACAAGATCGATATATTCAAGCAATGGAAAATATTGCATTCAATAGTGAAGCTAGTAGAGAGGCCACAAGTATCAGAGATAAAGAAAATAGAAAGCACATCAAGTGGCAGTAACAAATGGAAATGGAAAAGCAACAACGTACTAGAACTACAAAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.67

Weight (kDa)

9.71

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 1 cut(s) 275
AfaI GTAC 1 cut(s) 462
AgsI TTSAA 3 cut(s) 68, 340, 363
AluBI AGCT 5 cut(s) 26, 163, 253, 300, 373
AluI AGCT 5 cut(s) 26, 163, 253, 300, 373
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 126
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 226
BcnI CCSGG 1 cut(s) 269
BfaI CTAG 2 cut(s) 374, 464
BisI GCNGC 1 cut(s) 240
BlpI GCTNAGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 269
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu1102I GCTNAGC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 269
Bsa29I ATCGAT 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 350
BseCI ATCGAT 1 cut(s) 330
BseMI GCAATG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 385
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 1 cut(s) 268
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 327
Bsp1720I GCTNAGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 385
BspDI ATCGAT 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 350
BssMI GATC 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 296
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 1 cut(s) 385
BsuTUI ATCGAT 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 330
Csp6I GTAC 1 cut(s) 461
CviJI RGCY 6 cut(s) 26, 163, 253, 300, 373, 385
CviKI_1 RGCY 6 cut(s) 26, 163, 253, 300, 373, 385
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 1 cut(s) 296
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 275
FaiI YATR 9 cut(s) 51, 53, 82, 84, 177, 197, 199, 335, 481
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 374, 464
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 268
HinfI GANTC 3 cut(s) 68, 100, 279
HpaII CCGG 1 cut(s) 268
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 73, 190, 246, 397
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 459
Kzo9I GATC 1 cut(s) 327
LpnPI CCDG 1 cut(s) 281
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 282
MaeI CTAG 2 cut(s) 374, 464
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 152, 431
MalI GATC 1 cut(s) 329
MboI GATC 1 cut(s) 327
MboII GAAGA 5 cut(s) 95, 101, 268, 284, 321
MluCI AATT 3 cut(s) 13, 61, 126
MlyI GAGTC 2 cut(s) 109, 273
MnlI CCTC 3 cut(s) 117, 275, 375
MspI CCGG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 269
Mva1269I GAATGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 269
NdeII GATC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 152
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 2 cut(s) 108, 273
PpsI GAGTC 2 cut(s) 108, 273
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 1 cut(s) 327
SchI GAGTC 2 cut(s) 109, 273
ScrFI CCNGG 1 cut(s) 269
SetI ASST 8 cut(s) 28, 95, 117, 165, 255, 302, 375, 462
SfaNI GCATC 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 13, 61, 126
SspI AATATT 1 cut(s) 354
SspMI CTAG 2 cut(s) 374, 464
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 330
TasI AATT 3 cut(s) 13, 61, 126
TfiI GAWTC 1 cut(s) 68
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 152
TspGWI ACGGA 1 cut(s) 20
XapI RAATTY 1 cut(s) 126
XspI CTAG 2 cut(s) 374, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.