FvH4_4g12252

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000206
Physical Location & Seq
Reverse (-)
15957801 .. 15958843
1043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12252.t1

Sequence Viewer

Length: 630 bp
ATGGGTTCTAGTTGGCTTCTCTCCGAAGAGTTACAATTGTGTGTTTCTTGGGTACGACAATCCACTTGCAACATCACCGGCCGATATCAAAACAAAAACAATTTGTGGAAGAAAGTTCATGACGATTACGTCAAAAATTGGTGTGTCGATCCCGAAAATCCTCTAGCCGAGCCTCGTACGAAAGTTGCGCTCGAATCACATTTTCCGCGCTTGAAGAAATTGCTCAAGAAGTGGCATACATGTCTATACAAATCAAGAAACCGTGCGGCTAGCGGGACGAATTTGGTAGATGAGGAAACTCAAGCTCAATCATTATATTTCAAAGATGTTAGCAAGAAATTTGACAAGAAAGAATGTTATGAAGCGGTGATAAATCATCCTTATTTCTTGACGGTTGTGAGTACTCCTCCATTTGAGCGGAATTTTCCAATTTCTCCTGAGCTCCATGACACGGATGGGCATGTTGACTTGGATGATGATGAAGGATTCACAACTCCCGCGTCCAACCAAAAGAGACCTCGTCCCTCAAGTCCGGTTAGGCCTATGGGAGTAAAGGCGGCCAAGGAAGCAAAGAAGAAGGGAAAAAAAGGTATGGCGGAGAAATCAGTAGTCTTTAGCTATTTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

210

Amino Acids

24.01

Weight (kDa)

9.17

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04631 FvH4_1g14871 FvH4_3g18183 FvH4_4g07540 FvH4_4g11860 FvH4_4g12252 FvH4_4g14180 FvH4_4g24130 FvH4_5g15962 FvH4_5g21900 FvH4_5g34730 FvH4_5g38071 FvH4_6g38832 FvH4_7g00330 FvH4_7g07670 FvH4_7g08131 FvH4_7g29320
malus_domestica MD02G1308300.v1.1 MD03G1238900.v1.1 MD04G1103900.v1.1 MD08G1183800.v1.1 MD11G1096700.v1.1 MD11G1261300.v1.1 MD12G1048200.v1.1
pyrus_communis pycom01g07190 pycom01g17380 pycom02g05990 pycom02g17700 pycom02g17760 pycom02g17780 pycom03g02490 pycom03g07080 pycom03g08120 pycom03g11190 pycom03g11870 pycom03g16280 pycom04g02290 pycom04g05180 pycom04g07420 pycom04g10470 pycom04g10920 pycom04g11540 pycom05g00050 pycom05g04730 pycom05g04740 pycom05g07820 pycom05g13620 pycom05g19310 pycom06g03270 pycom06g08270 pycom06g09330 pycom06g20220 pycom07g08390 pycom07g22600 pycom08g09490 pycom08g13210 pycom08g14280 pycom08g15750 pycom08g18990 pycom08g21650 pycom09g01710 pycom09g03180 pycom09g09280 pycom09g10200 pycom09g11120 pycom09g11440 pycom10g02740 pycom10g07660 pycom10g09060 pycom10g20040 pycom111g01670 pycom11g08660 pycom11g09000 pycom11g12870 pycom11g14470 pycom11g15540 pycom11g19420 pycom11g22090 pycom12g10660 pycom12g11050 pycom12g12790 pycom12g14250 pycom13g14570 pycom13g26080 pycom14g00240 pycom15g10960 pycom15g24390 pycom15g31880 pycom15g32630 pycom15g33590 pycom16g07100 pycom16g09710 pycom16g20130 pycom16g21120 pycom17g02320 pycom17g11710 pycom17g14970 pycom17g19270 pycom17g22280 pycom17g23050 pycom17g25230
rosa_chinensis RchiOBHm_Chr7g0200361 RchiOBHm_Chr7g0226641
rosa_laevigata RLG00000030820
rosa_multiflora Rmu_sc0000129.1_g000009 Rmu_sc0000536.1_g000032 Rmu_sc0000663.1_g000015 Rmu_sc0000758.1_g000016 Rmu_sc0000857.1_g000019 Rmu_sc0001004.1_g000011 Rmu_sc0001096.1_g000018 Rmu_sc0001715.1_g000021 Rmu_sc0001781.1_g000006 Rmu_sc0002467.1_g000014 Rmu_sc0003018.1_g000003 Rmu_sc0003902.1_g000020 Rmu_sc0004048.1_g000013 Rmu_sc0005725.1_g000016 Rmu_sc0007871.1_g000002 Rmu_sc0008009.1_g000003 Rmu_sc0008223.1_g000013 Rmu_sc0008528.1_g000009 Rmu_sc0010621.1_g000003 Rmu_sc0010856.1_g000004 Rmu_sc0013113.1_g000005 Rmu_sc0016149.1_g000007 Rmu_ssc0000027.1_g000004 Rmu_ssc0000201.1_g000019
rosa_roxburghii Rroxscaffold_2G00109130 Rroxscaffold_3G00232550 Rroxscaffold_7G00176580
rosa_rugosa Rorug03G0276400 Rorug03G0276400
rosa_samantha Rh1CG005700 Rh2BG308900 Rh3BG239200 Rh4DG043100 Rh5AG498300 Rh5CG377400 Rh7BG373200 Rh7DG189000
rosa_wichuraiana Rw0G006950 Rw1G019470 Rw1G027440 Rw2G041930 Rw3G022370 Rw4G013430 Rw4G023110 Rw5G008510 Rw5G043680 Rw6G021680 Rw7G039660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 2 cut(s) 208, 500
AciI CCGC 8 cut(s) 206, 266, 273, 365, 418, 498, 557, 596
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 2 cut(s) 79, 558
AcsI RAATTY 3 cut(s) 280, 338, 421
AfaI GTAC 3 cut(s) 54, 178, 403
AfiI CCNNNNNNNGG 1 cut(s) 451
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 2 cut(s) 214, 322
AluBI AGCT 3 cut(s) 305, 442, 618
AluI AGCT 3 cut(s) 305, 442, 618
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 508
AlwI GGATC 1 cut(s) 143
AoxI GGCC 3 cut(s) 79, 539, 558
ApoI RAATTY 3 cut(s) 280, 338, 421
AspLEI GCGC 2 cut(s) 190, 210
AsuHPI GGTGA 2 cut(s) 67, 379
AsuNHI GCTAGC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 444
BccI CCATC 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 508
BfaI CTAG 3 cut(s) 9, 164, 270
BisI GCNGC 2 cut(s) 267, 558
BlsI GCNGC 2 cut(s) 268, 559
BmcAI AGTACT 1 cut(s) 403
BmtI GCTAGC 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 391, 423
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 3 cut(s) 209, 285, 511
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 3 cut(s) 376, 460, 478
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 429
BseRI GAGGAG 1 cut(s) 396
BseX3I CGGCCG 1 cut(s) 79
Bsh1236I CGCG 2 cut(s) 208, 500
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 81, 541, 560
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 2 cut(s) 78, 533
BsiWI CGTACG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 289, 507
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 508
BsmFI GGGAC 2 cut(s) 289, 507
BsnI GGCC 3 cut(s) 81, 541, 560
Bso31I GGTCTC 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 8 cut(s) 206, 266, 273, 365, 418, 498, 557, 596
BspANI GGCC 3 cut(s) 81, 541, 560
BspCNI CTCAG 1 cut(s) 430
BspFNI CGCG 2 cut(s) 208, 500
BspHI TCATGA 1 cut(s) 118
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 508
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 561
Bst4CI ACNGT 2 cut(s) 263, 394
Bst6I CTCTTC 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 3 cut(s) 376, 460, 478
BstFNI CGCG 2 cut(s) 208, 500
BstHHI GCGC 2 cut(s) 190, 210
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 508
BstMBI GATC 1 cut(s) 148
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstNSI RCATGY 2 cut(s) 243, 464
BstUI CGCG 2 cut(s) 208, 500
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 3 cut(s) 81, 541, 560
BtsCI GGATG 3 cut(s) 376, 460, 478
Cac8I GCNNGC 1 cut(s) 271
CciI TCATGA 1 cut(s) 118
CfoI GCGC 2 cut(s) 190, 210
Cfr10I RCCGGY 1 cut(s) 77
CseI GACGC 1 cut(s) 489
Csp6I GTAC 3 cut(s) 53, 177, 402
CviAII CATG 4 cut(s) 119, 240, 446, 461
CviQI GTAC 3 cut(s) 53, 177, 402
DdeI CTNAG 1 cut(s) 438
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 79, 558
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 611
Ecl136II GAGCTC 1 cut(s) 442
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 561
Eco147I AGGCCT 1 cut(s) 541
Eco24I GRGCYC 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 508
Eco32I GATATC 1 cut(s) 86
Eco52I CGGCCG 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 442
EcoICRI GAGCTC 1 cut(s) 442
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 4 cut(s) 122, 243, 449, 464
FaqI GGGAC 2 cut(s) 289, 507
FatI CATG 4 cut(s) 118, 239, 445, 460
FauI CCCGC 2 cut(s) 266, 505
Fnu4HI GCNGC 2 cut(s) 267, 558
FokI GGATG 3 cut(s) 363, 467, 485
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 267, 558
FspBI CTAG 3 cut(s) 9, 164, 270
GlaI GCGC 2 cut(s) 189, 209
GluI GCNGC 2 cut(s) 267, 558
HaeIII GGCC 3 cut(s) 81, 541, 560
HapII CCGG 2 cut(s) 78, 533
HgaI GACGC 1 cut(s) 489
HhaI GCGC 2 cut(s) 190, 210
Hin1II CATG 4 cut(s) 122, 243, 449, 464
Hin6I GCGC 2 cut(s) 188, 208
HinP1I GCGC 2 cut(s) 188, 208
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 2 cut(s) 194, 486
HpaII CCGG 2 cut(s) 78, 533
HphI GGTGA 2 cut(s) 67, 379
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 6 cut(s) 119, 152, 226, 255, 388, 437
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 476, 571
HpyCH4III ACNGT 2 cut(s) 263, 394
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 4 cut(s) 122, 243, 449, 464
HspAI GCGC 2 cut(s) 188, 208
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 3 cut(s) 91, 450, 546
MaeI CTAG 3 cut(s) 9, 164, 270
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 30
MalI GATC 1 cut(s) 150
MbiI CCGCTC 1 cut(s) 418
MboI GATC 1 cut(s) 148
MboII GAAGA 4 cut(s) 38, 121, 226, 586
MfeI CAATTG 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 8 cut(s) 35, 100, 136, 218, 280, 338, 421, 429
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 6 cut(s) 171, 183, 286, 417, 528, 535
MspI CCGG 2 cut(s) 78, 533
MunI CAATTG 1 cut(s) 35
MvnI CGCG 2 cut(s) 208, 500
MwoI GCNNNNNNNGC 1 cut(s) 566
NdeII GATC 1 cut(s) 148
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 4 cut(s) 122, 243, 449, 464
NmeAIII GCCGAG 1 cut(s) 193
NspI RCATGY 2 cut(s) 243, 464
PagI TCATGA 1 cut(s) 118
PceI AGGCCT 1 cut(s) 541
PciI ACATGT 1 cut(s) 239
PfeI GAWTC 2 cut(s) 194, 486
Pfl23II CGTACG 1 cut(s) 176
PflFI GACNNNGTC 1 cut(s) 519
PkrI GCNGC 2 cut(s) 268, 559
PscI ACATGT 1 cut(s) 239
Psp124BI GAGCTC 1 cut(s) 444
PspLI CGTACG 1 cut(s) 176
PsyI GACNNNGTC 1 cut(s) 519
RsaI GTAC 3 cut(s) 54, 178, 403
RsaNI GTAC 3 cut(s) 53, 177, 402
SacI GAGCTC 1 cut(s) 444
SatI GCNGC 2 cut(s) 267, 558
Sau3AI GATC 1 cut(s) 148
ScaI AGTACT 1 cut(s) 403
SduI GDGCHC 1 cut(s) 444
SetI ASST 6 cut(s) 132, 307, 444, 520, 592, 620
SmlI CTYRAG 3 cut(s) 224, 300, 526
SmoI CTYRAG 3 cut(s) 224, 300, 526
Sse9I AATT 8 cut(s) 35, 100, 136, 218, 280, 338, 421, 429
SseBI AGGCCT 1 cut(s) 541
SsiI CCGC 8 cut(s) 206, 266, 273, 365, 418, 498, 557, 596
SspMI CTAG 3 cut(s) 9, 164, 270
SstI GAGCTC 1 cut(s) 444
StuI AGGCCT 1 cut(s) 541
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 2 cut(s) 263, 394
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 147, 192
TasI AATT 8 cut(s) 35, 100, 136, 218, 280, 338, 421, 429
TatI WGTACW 1 cut(s) 401
TauI GCSGC 2 cut(s) 269, 560
TfiI GAWTC 2 cut(s) 194, 486
TspDTI ATGAA 4 cut(s) 107, 375, 495, 615
TspGWI ACGGA 1 cut(s) 467
Tth111I GACNNNGTC 1 cut(s) 519
XapI RAATTY 3 cut(s) 280, 338, 421
XceI RCATGY 2 cut(s) 243, 464
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XspI CTAG 3 cut(s) 9, 164, 270
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.