FvH4_2g07531
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
6333403 .. 6334110
708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07531.t1

Sequence Viewer

Length: 708 bp
ATGGATCTTGCAATCTTTGGTGATCAACCTGAAGTTTCCCGTGAACAATTGATGGCTCTTCAAAACAAGAGCTCAGGCTTTGGAGTGAAACTGGATGGCACAAACTATCCAGTATGGCGACGACTTATGAAGATGCATCTTGGTGGTGTGGGCAAGTGGGAATATGTCGCTGGCACTCTCCAACGACCTGAAGAAGTTGGCAAGGCACAAGCTATGTGGGATGCTGCAAATTCTAATACGATGGTGCTTCTTCTCAAATCCATGACCAGACCAATCATGCTGTTGTTGTCAAGCTATACGACACCAAAGGCAATCTGGGATGCAGTCGCAACCACATACTATGATGGGAGTGATTTTGCAACAGTTCATGAGTTGACCTGTCAAGCTTTCGCAACCACTCAAGCTGGTAAGCCTCTTGCAGAATATTATGCCGGCTTGAAGGCTATCTGGCAAGAGTTGGATGAAAGGGACCCCAATCTTATGGTGTGTGATCTGGATATAACTACACACAACAAGTCCCAAGACAAGATGCGAGTCCACATCTTCTTGAATGGATTGGATTCAAAATTTGCTACTTCTAAGGGAGAACTGCTTCGACAAGCCACACCACCAAGTCTGGAACAAGCTTATGCTTATGTACGCAAAGATGAATCCAATCAGTCTAGCGCAAAGGAGTTGCATATCGAGGTATCCAGCCTCACTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

236

Amino Acids

26.26

Weight (kDa)

5.76

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 29 - 64 1.3e-06 gag-polypeptide of LTR copia-type
Retrotran_gag_2 PF14223 43 - 157 8.4e-08 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 229, 566
AcuI CTGAAG 2 cut(s) 51, 210
AfaI GTAC 1 cut(s) 639
AgsI TTSAA 4 cut(s) 62, 439, 550, 564
AluBI AGCT 6 cut(s) 72, 212, 294, 386, 404, 626
AluI AGCT 6 cut(s) 72, 212, 294, 386, 404, 626
Alw21I GWGCWC 1 cut(s) 74
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 2 cut(s) 229, 566
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 469
BanII GRGCYC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 211
BccI CCATC 4 cut(s) 46, 89, 235, 338
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 22
BfaI CTAG 1 cut(s) 663
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 2 cut(s) 470, 471
BmsI GCATC 5 cut(s) 123, 145, 211, 310, 519
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 384
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 2 cut(s) 96, 110
BseGI GGATG 4 cut(s) 100, 226, 325, 466
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 96, 110
BseXI GCAGC 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 482, 502
BsmFI GGGAC 2 cut(s) 482, 502
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 3 cut(s) 4, 22, 490
BspCNI CTCAG 1 cut(s) 86
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 470, 471
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 2 cut(s) 96, 110
BssAI RCCGGY 1 cut(s) 431
BssMI GATC 3 cut(s) 4, 22, 490
Bst4CI ACNGT 2 cut(s) 364, 703
Bst6I CTCTTC 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 172, 433
BstDEI CTNAG 2 cut(s) 73, 579
BstF5I GGATG 4 cut(s) 100, 226, 325, 466
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 3 cut(s) 7, 25, 493
BstMBI GATC 3 cut(s) 4, 22, 490
BstV1I GCAGC 1 cut(s) 211
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 700
BtsCI GGATG 4 cut(s) 100, 226, 325, 466
BtsIMutI CAGTG 1 cut(s) 699
Cac8I GCNNGC 2 cut(s) 172, 433
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 638
CspCI CAANNNNNGTGG 2 cut(s) 197, 232
CviAII CATG 3 cut(s) 262, 277, 368
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 2 cut(s) 73, 579
DpnI GATC 3 cut(s) 6, 24, 492
DpnII GATC 3 cut(s) 4, 22, 490
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Ecl136II GAGCTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 469
Eco53kI GAGCTC 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 51, 210
EcoICRI GAGCTC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 469
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 74
FaeI CATG 3 cut(s) 265, 280, 371
FaqI GGGAC 2 cut(s) 482, 502
FatI CATG 3 cut(s) 261, 276, 367
FbaI TGATCA 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 4 cut(s) 107, 233, 332, 473
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 663
GlaI GCGC 1 cut(s) 667
GluI GCNGC 1 cut(s) 225
HapII CCGG 1 cut(s) 432
HhaI GCGC 1 cut(s) 668
Hin1II CATG 3 cut(s) 265, 280, 371
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 375
HindII GTYRAC 1 cut(s) 375
HindIII AAGCTT 2 cut(s) 384, 624
HinfI GANTC 3 cut(s) 534, 560, 650
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 3 cut(s) 44, 375, 538
Hpy188III TCNNGA 4 cut(s) 368, 494, 547, 617
Hpy8I GTNNAC 3 cut(s) 44, 375, 538
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 2 cut(s) 364, 703
HpyCH4V TGCA 7 cut(s) 11, 136, 227, 323, 359, 419, 679
HpyF3I CTNAG 2 cut(s) 73, 579
Hsp92II CATG 3 cut(s) 265, 280, 371
HspAI GCGC 1 cut(s) 666
KflI GGGWCCC 1 cut(s) 469
KroI GCCGGC 1 cut(s) 431
KroNI GCCGGC 1 cut(s) 433
Ksp22I TGATCA 1 cut(s) 22
Kzo9I GATC 3 cut(s) 4, 22, 490
LguI GCTCTTC 1 cut(s) 63
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 5 cut(s) 123, 145, 211, 310, 519
MaeI CTAG 1 cut(s) 663
MalI GATC 3 cut(s) 6, 24, 492
MboI GATC 3 cut(s) 4, 22, 490
MboII GAAGA 5 cut(s) 50, 142, 203, 242, 535
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 47, 229, 566
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 2 cut(s) 205, 438
MnlI CCTC 3 cut(s) 423, 679, 707
Mph1103I ATGCAT 1 cut(s) 138
MroNI GCCGGC 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 432
MunI CAATTG 1 cut(s) 47
NaeI GCCGGC 1 cut(s) 433
NdeII GATC 3 cut(s) 4, 22, 490
NgoMIV GCCGGC 1 cut(s) 431
NlaIII CATG 3 cut(s) 265, 280, 371
NlaIV GGNNCC 2 cut(s) 470, 471
NsiI ATGCAT 1 cut(s) 138
PagI TCATGA 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 433
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 560, 650
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 470, 471
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 63
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 3 cut(s) 4, 22, 490
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 1 cut(s) 543
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 5 cut(s) 123, 145, 211, 310, 519
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 3 cut(s) 47, 229, 566
SspI AATATT 1 cut(s) 425
SspMI CTAG 1 cut(s) 663
SstI GAGCTC 1 cut(s) 74
TaaI ACNGT 2 cut(s) 364, 703
TaqI TCGA 2 cut(s) 595, 684
TasI AATT 3 cut(s) 47, 229, 566
TfiI GAWTC 2 cut(s) 560, 650
TscAI CASTG 1 cut(s) 706
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 4 cut(s) 143, 356, 477, 663
TspRI CASTG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 229, 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 663
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.