Rmu_sc0003063.1_g000028
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003063.1
Physical Location & Seq
Forward (+)
103490 .. 104056
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003063.1_g000028.1.cds

Sequence Viewer

Length: 567 bp
atgaaacaggatgggcaagcaatttcaacgttctacgcccagctaaagaacgtttgggctgagattgatcagcggcgaccaaacatattgaaaaatattgaggatatcacctggtacgtcaaggagaaggagttggagtgtatgcaccagtttctgagtggattagatgctagacatgacagtgccaagggagagctgttacgtcggcaagagcctccttcccttattgaggattttacgtacatccgtaaggatgagtctcagcaggatagcacaaagggagtcctttttgaaatctctagcctaactgtccaagctaagccttcacgggatcaaggtccacctcttggattcgtaacagcacattcaggacttcgtcccatgactcagtctccttcatcaagagtcaattctgggttagtaaaaaatgctggatatatcaaggagactttctataagttggctgggtatccagctggatatttcagcaagcctaagccaacaggacctaaagtgtacatacctccactaatatggaggatttgctacatcaacaatcataagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

9.24

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AciI CCGC 1 cut(s) 73
AclI AACGTT 2 cut(s) 29, 51
AclWI GGATC 1 cut(s) 339
AfaI GTAC 3 cut(s) 116, 242, 518
AfiI CCNNNNNNNGG 2 cut(s) 229, 347
AgsI TTSAA 3 cut(s) 27, 91, 293
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 4 cut(s) 43, 196, 317, 476
AluI AGCT 4 cut(s) 43, 196, 317, 476
Alw26I GTCTC 3 cut(s) 264, 396, 440
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 338, 506
AsuHPI GGTGA 1 cut(s) 100
AvaII GGWCC 2 cut(s) 338, 506
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 3 cut(s) 264, 396, 440
BfaI CTAG 2 cut(s) 171, 300
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 1 cut(s) 74
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 338, 506
BmgT120I GGNCC 2 cut(s) 338, 506
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 495
Bpu1102I GCTNAGC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 6 cut(s) 116, 122, 146, 152, 376, 406
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 347
Bse1I ACTGG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 16, 243, 259
BseLI CCNNNNNNNGG 2 cut(s) 229, 347
BseMII CTCAG 4 cut(s) 51, 146, 275, 401
BseNI ACTGG 1 cut(s) 148
BseYI CCCAGC 2 cut(s) 39, 464
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 2 cut(s) 229, 347
BsmAI GTCTC 3 cut(s) 264, 396, 440
BsmFI GGGAC 1 cut(s) 363
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 2 cut(s) 67, 331
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 4 cut(s) 52, 147, 274, 400
BspPI GGATC 1 cut(s) 339
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 67, 331
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 182, 310
BstAUI TGTACA 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 18, 491
BstDEI CTNAG 6 cut(s) 60, 155, 261, 318, 387, 495
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 3 cut(s) 16, 243, 259
BstKTI GATC 2 cut(s) 70, 334
BstMAI GTCTC 3 cut(s) 264, 396, 440
BstMBI GATC 2 cut(s) 67, 331
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstSNI TACGTA 1 cut(s) 240
BstXI CCANNNNNNTGG 1 cut(s) 534
BsuI GTATCC 1 cut(s) 480
BtsCI GGATG 3 cut(s) 16, 243, 259
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 18, 491
CaiI CAGNNNCTG 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 338, 506
CsiI ACCWGGT 1 cut(s) 110
Csp6I GTAC 3 cut(s) 115, 241, 517
CviAII CATG 2 cut(s) 176, 382
CviQI GTAC 3 cut(s) 115, 241, 517
DdeI CTNAG 6 cut(s) 60, 155, 261, 318, 387, 495
DpnI GATC 2 cut(s) 69, 333
DpnII GATC 2 cut(s) 67, 331
Eco105I TACGTA 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 186
Eco32I GATATC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 338, 506
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 110
EcoRV GATATC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 179, 385
FaiI YATR 9 cut(s) 86, 143, 177, 383, 438, 456, 521, 535, 561
FaqI GGGAC 1 cut(s) 363
FatI CATG 2 cut(s) 175, 381
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 3 cut(s) 23, 230, 266
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 171, 300
GluI GCNGC 1 cut(s) 74
GsaI CCCAGC 2 cut(s) 43, 468
Hin1II CATG 2 cut(s) 179, 385
HinfI GANTC 5 cut(s) 257, 282, 351, 385, 405
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 341, 517
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 369, 402
Hpy8I GTNNAC 2 cut(s) 341, 517
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 4 cut(s) 121, 228, 333, 405
HpyCH4III ACNGT 2 cut(s) 182, 310
HpyCH4IV ACGT 5 cut(s) 29, 51, 117, 202, 239
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 6 cut(s) 60, 155, 261, 318, 387, 495
HpySE526I ACGT 5 cut(s) 29, 51, 117, 202, 239
Hsp92II CATG 2 cut(s) 179, 385
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 2 cut(s) 67, 331
LweI GCATC 1 cut(s) 157
MabI ACCWGGT 1 cut(s) 110
MaeI CTAG 2 cut(s) 171, 300
MaeII ACGT 5 cut(s) 29, 51, 117, 202, 239
MaeIII GTNAC 2 cut(s) 198, 355
MalI GATC 2 cut(s) 69, 333
MboI GATC 2 cut(s) 67, 331
MluCI AATT 2 cut(s) 21, 409
MlyI GAGTC 4 cut(s) 266, 291, 379, 414
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 6 cut(s) 94, 223, 225, 354, 531, 534
MslI CAYNNNNRTG 2 cut(s) 180, 532
MspA1I CMGCKG 2 cut(s) 73, 476
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
NdeII GATC 2 cut(s) 67, 331
NlaIII CATG 2 cut(s) 179, 385
PfeI GAWTC 1 cut(s) 351
PflFI GACNNNGTC 2 cut(s) 375, 388
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 4 cut(s) 265, 290, 379, 413
PpsI GAGTC 4 cut(s) 265, 290, 379, 413
Ppu21I YACGTR 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 506
Psp1406I AACGTT 2 cut(s) 29, 51
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 2 cut(s) 39, 464
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 2 cut(s) 338, 506
PspPPI RGGWCCY 1 cut(s) 506
PstNI CAGNNNCTG 1 cut(s) 154
PsyI GACNNNGTC 2 cut(s) 375, 388
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 116, 242, 518
RsaNI GTAC 3 cut(s) 115, 241, 517
RseI CAYNNNNRTG 2 cut(s) 180, 532
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 67, 331
Sau96I GGNCC 2 cut(s) 338, 506
SchI GAGTC 4 cut(s) 266, 291, 379, 414
ScrFI CCNGG 1 cut(s) 112
SexAI ACCWGGT 1 cut(s) 110
SfaNI GCATC 1 cut(s) 157
SinI GGWCC 2 cut(s) 338, 506
SmiMI CAYNNNNRTG 2 cut(s) 180, 532
SnaBI TACGTA 1 cut(s) 240
Sse9I AATT 2 cut(s) 21, 409
SsiI CCGC 1 cut(s) 73
SspI AATATT 1 cut(s) 97
SspMI CTAG 2 cut(s) 171, 300
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 182, 310
TaiI ACGT 5 cut(s) 32, 54, 120, 205, 242
TasI AATT 2 cut(s) 21, 409
TatI WGTACW 1 cut(s) 516
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 351
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 17, 387
TspGWI ACGGA 1 cut(s) 236
TspRI CASTG 1 cut(s) 187
Tth111I GACNNNGTC 2 cut(s) 375, 388
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 338, 506
XagI CCTNNNNNAGG 1 cut(s) 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
XspI CTAG 2 cut(s) 171, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.