pycom15g04350

Glutamate receptor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
2607062 .. 2607772
711 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04350.3

Sequence Viewer

Length: 582 bp
ATGTTTTTATCAATTTCACATGTTGCCACTTTAGTATCTCTCACCCTGTTGGTGCAATCGTCTAAGTTCAATGGTGGTCTACTGCTTAGCGCCAAGTTTGGCTACCTGATTCCTAGATTCTTATCCATCCATTGCAATCAACTTAAGGAATTGAATCAAATCTGTTGGAGTTTTGACAAGGAAGAGAAGAAGAAAAATGAATGTCGAAACTCAGAGGTTGGCTCCAATGAGGTATTGACTTGTTTCTATTCATTTTATGATCAGTTTGGTGAGACCTTTCTCACGCCACATGGGAGGGGACTTGTTCTTCCTCTCTCGTATGTATATAGAGAGGTGTGTTGGTGTTCGCTCTCTTGGTGTACATGTTTTACTCACTTGGTGCCCCTCAAGAATAGGCCCAATGTTGGCTATCAAGTAGGTTCTTTTGTTTACGGGATTATGAAACAAATAGGATTTCGGGTTGAAGATCTCAAGATTCCTAAATTCGCAGAAGAGTTGAATCAACTCTTTCAAAATTGTAGTGGAAAATATGGTACTTCCGCAACCTCGATGGACCAAACTTTTTTCTTTTTTCTTTTTTGA

Protein Analysis

194

Amino Acids

22.18

Weight (kDa)

8.34

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 79
AciI CCGC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 482
AdeI CACNNNGTG 1 cut(s) 379
AfaI GTAC 2 cut(s) 361, 535
AfiI CCNNNNNNNGG 1 cut(s) 404
AflII CTTAAG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 19, 362
AgsI TTSAA 5 cut(s) 70, 154, 464, 499, 512
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 482
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 396, 553
AsuHPI GGTGA 2 cut(s) 34, 281
AvaII GGWCC 1 cut(s) 553
BaeGI GKGCMC 1 cut(s) 384
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BanI GGYRCC 1 cut(s) 379
BccI CCATC 2 cut(s) 134, 544
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 143
BglII AGATCT 1 cut(s) 466
BlpI GCTNAGC 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 2 cut(s) 396, 553
BmiI GGNNCC 2 cut(s) 223, 381
BplI GAGNNNNNCTC 2 cut(s) 206, 238
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 371, 455
BsaBI GATNNNNATC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 130
Bse8I GATNNNNATC 1 cut(s) 121
BseGI GGATG 1 cut(s) 126
BseJI GATNNNNATC 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 384
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 384
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 2 cut(s) 259, 466
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 1 cut(s) 540
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 223, 381
BspT107I GGYRCC 1 cut(s) 379
BspTI CTTAAG 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 359
BssMI GATC 2 cut(s) 259, 466
Bst6I CTCTTC 2 cut(s) 177, 486
BstAFI CTTAAG 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 63, 86, 211
BstF5I GGATG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 262, 469
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 2 cut(s) 259, 466
BstNSI RCATGY 2 cut(s) 23, 366
BstSLI GKGCMC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 126
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 396, 553
Csp6I GTAC 2 cut(s) 360, 534
CviAII CATG 3 cut(s) 20, 290, 363
CviJI RGCY 4 cut(s) 102, 222, 397, 408
CviKI_1 RGCY 4 cut(s) 102, 222, 397, 408
CviQI GTAC 2 cut(s) 360, 534
DdeI CTNAG 3 cut(s) 63, 86, 211
DpnI GATC 2 cut(s) 261, 468
DpnII GATC 2 cut(s) 259, 466
DraIII CACNNNGTG 1 cut(s) 379
Eam1104I CTCTTC 2 cut(s) 177, 486
EarI CTCTTC 2 cut(s) 177, 486
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 553
FaeI CATG 3 cut(s) 23, 293, 366
FaiI YATR 9 cut(s) 21, 258, 291, 321, 325, 327, 364, 440, 531
FaqI GGGAC 1 cut(s) 312
FatI CATG 3 cut(s) 19, 289, 362
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 79
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 1 cut(s) 397
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 23, 293, 366
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 5 cut(s) 109, 117, 154, 475, 499
HphI GGTGA 2 cut(s) 34, 281
Hpy166II GTNNAC 3 cut(s) 80, 360, 430
Hpy188I TCNGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 388, 472
Hpy8I GTNNAC 3 cut(s) 80, 360, 430
HpyCH4V TGCA 2 cut(s) 55, 135
HpyF3I CTNAG 3 cut(s) 63, 86, 211
Hsp92II CATG 3 cut(s) 23, 293, 366
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 466
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 2 cut(s) 59, 119
MaeI CTAG 1 cut(s) 114
MalI GATC 2 cut(s) 261, 468
MboI GATC 2 cut(s) 259, 466
MboII GAAGA 6 cut(s) 194, 199, 202, 299, 476, 503
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 4 cut(s) 12, 149, 482, 514
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 208, 223, 288, 321, 325, 395, 556
MseI TTAA 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 143
NdeII GATC 2 cut(s) 259, 466
NlaIII CATG 3 cut(s) 23, 293, 366
NlaIV GGNNCC 2 cut(s) 223, 381
NspI RCATGY 2 cut(s) 23, 366
PciI ACATGT 2 cut(s) 19, 362
PfeI GAWTC 5 cut(s) 109, 117, 154, 475, 499
PscI ACATGT 2 cut(s) 19, 362
PspN4I GGNNCC 2 cut(s) 223, 381
PspPI GGNCC 2 cut(s) 396, 553
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 2 cut(s) 361, 535
RsaNI GTAC 2 cut(s) 360, 534
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 259, 466
Sau96I GGNCC 2 cut(s) 396, 553
SduI GDGCHC 1 cut(s) 384
SetI ASST 7 cut(s) 108, 219, 234, 278, 336, 421, 548
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 3 cut(s) 143, 386, 470
SmoI CTYRAG 3 cut(s) 143, 386, 470
Sse9I AATT 4 cut(s) 12, 149, 482, 514
SsiI CCGC 1 cut(s) 540
SspMI CTAG 1 cut(s) 114
TaqI TCGA 2 cut(s) 205, 548
TasI AATT 4 cut(s) 12, 149, 482, 514
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 5 cut(s) 109, 117, 154, 475, 499
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 3 cut(s) 213, 240, 455
Vha464I CTTAAG 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 553
XapI RAATTY 1 cut(s) 482
XceI RCATGY 2 cut(s) 23, 366
XmiI GTMKAC 1 cut(s) 79
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.