Rmu_sc0003730.1_g000017
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003730.1
OG0000146
Physical Location & Seq
Reverse (-)
62911 .. 63393
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003730.1_g000017.1.cds

Sequence Viewer

Length: 483 bp
ctgaagaacatttgggctgagattgatcagcggcgacctaacaaattgaaggatgctaaggatatcacctggtatgtcaaggagaaggagttggagcgtgtgcaccagtttctcagtggattagatactagacatgacaatgccaagggagagttactacgtcggcaagagtctccttcccttattgaggcgtttaactacaaccataaggatgagtctcagcaggatagcgcaaagggagtcatttatgaaatctctagcctgatagtccatgctaagccctcacgggctcaagatccacctcctggcttcactgcaccacattcaggacttcatcccatgactcaggctccttcatcaggagccaattctaggttggtatgtcagcattgcaatctacctggacatgccaaggagacttgctataagctagttgggtatctagctggatatttcagcaagcctaagccaacaggaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

160

Amino Acids

17.97

Weight (kDa)

8.95

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AciI CCGC 1 cut(s) 31
AclWI GGATC 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 23
AfiI CCNNNNNNNGG 5 cut(s) 187, 305, 326, 359, 372
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 3 cut(s) 68, 304, 400
AluBI AGCT 2 cut(s) 430, 446
AluI AGCT 2 cut(s) 430, 446
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 3 cut(s) 177, 222, 410
Alw44I GTGCAC 1 cut(s) 101
AlwI GGATC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 1 cut(s) 105
BciT130I CCWGG 3 cut(s) 70, 306, 402
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 3 cut(s) 177, 222, 410
BfaI CTAG 5 cut(s) 129, 258, 372, 431, 443
BisI GCNGC 1 cut(s) 32
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 3 cut(s) 70, 306, 402
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 351, 364
BmrFI CCNGG 3 cut(s) 70, 306, 402
BmsI GCATC 1 cut(s) 43
Bpu10I CCTNAGC 2 cut(s) 57, 465
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 276
BsaJI CCNNGG 2 cut(s) 144, 411
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 334, 364
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 305, 326, 359, 372
Bse1I ACTGG 1 cut(s) 106
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 3 cut(s) 70, 306, 402
BseDI CCNNGG 2 cut(s) 144, 411
BseGI GGATG 3 cut(s) 58, 217, 334
BseLI CCNNNNNNNGG 5 cut(s) 187, 305, 326, 359, 372
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 4 cut(s) 9, 127, 233, 359
BseNI ACTGG 1 cut(s) 106
BseSI GKGCMC 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 5 cut(s) 187, 305, 326, 359, 372
BsmAI GTCTC 3 cut(s) 177, 222, 410
Bsp1286I GDGCHC 2 cut(s) 105, 292
Bsp143I GATC 2 cut(s) 25, 295
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 1 cut(s) 31
BspCNI CTCAG 4 cut(s) 10, 126, 232, 358
BspLI GGNNCC 2 cut(s) 351, 364
BspPI GGATC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 388
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 144, 411
BssMI GATC 2 cut(s) 25, 295
BssT1I CCWWGG 2 cut(s) 144, 411
Bst2UI CCWGG 3 cut(s) 70, 306, 402
BstC8I GCNNGC 1 cut(s) 461
BstDEI CTNAG 7 cut(s) 18, 57, 113, 219, 276, 345, 465
BstENI CCTNNNNNAGG 2 cut(s) 185, 357
BstF5I GGATG 3 cut(s) 58, 217, 334
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 28, 298
BstMAI GTCTC 3 cut(s) 177, 222, 410
BstMBI GATC 2 cut(s) 25, 295
BstNI CCWGG 3 cut(s) 70, 306, 402
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 68, 304, 400
BstSLI GKGCMC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BtsCI GGATG 3 cut(s) 58, 217, 334
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 121, 312
Cac8I GCNNGC 1 cut(s) 461
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 476
CsiI ACCWGGT 1 cut(s) 68
CviAII CATG 4 cut(s) 134, 272, 340, 407
DdeI CTNAG 7 cut(s) 18, 57, 113, 219, 276, 345, 465
DpnI GATC 2 cut(s) 27, 297
DpnII GATC 2 cut(s) 25, 295
Eco130I CCWWGG 2 cut(s) 144, 411
Eco24I GRGCYC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 23
EcoNI CCTNNNNNAGG 2 cut(s) 185, 357
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 68, 304, 400
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 144, 411
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 2 cut(s) 144, 411
FaeI CATG 4 cut(s) 137, 275, 343, 410
FaiI YATR 9 cut(s) 75, 135, 207, 249, 273, 341, 382, 408, 426
FatI CATG 4 cut(s) 133, 271, 339, 406
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 3 cut(s) 65, 224, 321
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 5 cut(s) 129, 258, 372, 431, 443
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 233
Hin1II CATG 4 cut(s) 137, 275, 343, 410
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 4 cut(s) 170, 215, 240, 343
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 3 cut(s) 293, 327, 360
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 4 cut(s) 43, 79, 186, 363
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 103, 317, 393
HpyF3I CTNAG 7 cut(s) 18, 57, 113, 219, 276, 345, 465
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 4 cut(s) 137, 275, 343, 410
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 2 cut(s) 25, 295
LmnI GCTCC 3 cut(s) 94, 355, 362
LweI GCATC 1 cut(s) 43
MabI ACCWGGT 1 cut(s) 68
MaeI CTAG 5 cut(s) 129, 258, 372, 431, 443
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 27, 297
MboI GATC 2 cut(s) 25, 295
MboII GAAGA 1 cut(s) 16
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 2 cut(s) 105, 292
MluCI AATT 2 cut(s) 44, 367
MlyI GAGTC 4 cut(s) 179, 224, 249, 337
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 181, 292, 312
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 138, 210
MspA1I CMGCKG 1 cut(s) 31
MspR9I CCNGG 3 cut(s) 70, 306, 402
MvaI CCWGG 3 cut(s) 70, 306, 402
NdeII GATC 2 cut(s) 25, 295
NlaIII CATG 4 cut(s) 137, 275, 343, 410
NlaIV GGNNCC 2 cut(s) 351, 364
NspI RCATGY 1 cut(s) 410
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 4 cut(s) 178, 223, 248, 337
PpsI GAGTC 4 cut(s) 178, 223, 248, 337
PpuMI RGGWCCY 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 3 cut(s) 68, 304, 400
PspGI CCWGG 3 cut(s) 68, 304, 400
PspN4I GGNNCC 2 cut(s) 351, 364
PspPI GGNCC 1 cut(s) 476
PspPPI RGGWCCY 1 cut(s) 476
PsuI RGATCY 1 cut(s) 295
RseI CAYNNNNRTG 2 cut(s) 138, 210
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 25, 295
Sau96I GGNCC 1 cut(s) 476
SchI GAGTC 4 cut(s) 179, 224, 249, 337
ScrFI CCNGG 3 cut(s) 70, 306, 402
SduI GDGCHC 2 cut(s) 105, 292
SetI ASST 9 cut(s) 40, 71, 163, 304, 377, 403, 432, 448, 481
SexAI ACCWGGT 1 cut(s) 68
SfaNI GCATC 1 cut(s) 43
SinI GGWCC 1 cut(s) 476
SmiMI CAYNNNNRTG 2 cut(s) 138, 210
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 2 cut(s) 44, 367
SsiI CCGC 1 cut(s) 31
SspMI CTAG 5 cut(s) 129, 258, 372, 431, 443
StyD4I CCNGG 3 cut(s) 68, 304, 400
StyI CCWWGG 2 cut(s) 144, 411
TaiI ACGT 1 cut(s) 163
TasI AATT 2 cut(s) 44, 367
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 121, 319
TspDTI ATGAA 3 cut(s) 264, 323, 345
TspRI CASTG 2 cut(s) 121, 319
Van91I CCANNNNNTGG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 476
XagI CCTNNNNNAGG 2 cut(s) 185, 357
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 2 cut(s) 113, 373
XspI CTAG 5 cut(s) 129, 258, 372, 431, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.