Rmu_sc0001768.1_g000015
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001768.1
OG0000146
Physical Location & Seq
Reverse (-)
67415 .. 68509
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001768.1_g000015.1.cds

Sequence Viewer

Length: 837 bp
atggcaaaggcttataaagatccatattcaggggattggaaagtggagttatgtaccggtagtgcagccagacctgctgcaggaccaaaagccgatgaatgggatacgacaaagaagaaggcgaggggaattcttctcaaggctatgaccccggaggtaatgagattatttgctaactatgattctcccaaagaaatttgggattctgttactgctagatattatgatgggagtgactttgctcgtgttcatgaattgaatgtcaaagctttcaaaataactcagagtggacagcctattgcaaccttttatgcgaatttgaagacaatttggcaggagcttaatcagagaaaccctaatcctatgacttgtgaagttgatattaattcctatcggactgagcaggacaagatgcgtgtccatatttttcttgctggcctggaccctcactttgaaggggcaaagaatgagttattgcgtgttgcaactccacctacatttgaacaagcttttgcctatatccgaagagatgaaggtaataaggttgccgctcagaaccttcatactgaaatttctagtttagcaatccatgctacacctccacctccacctccacctcaacctcagattgggaattctaccctaggtaatgtttccttgactaagggaactcgaggtaaaattggtgttgctttacatgtttctgactttactggtggtgatacatggataattgattctggaccaatttacaagcccttctggattcaaaaacccgtcatgaacgttgtcccctacctagacaccattccacataggctatacttactaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

278

Amino Acids

31.17

Weight (kDa)

8.89

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 82
AccBSI CCGCTC 1 cut(s) 551
AciI CCGC 1 cut(s) 549
AclI AACGTT 1 cut(s) 786
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 5 cut(s) 129, 195, 316, 570, 634
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 4 cut(s) 29, 80, 99, 629
AflIII ACRYGT 1 cut(s) 697
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 6 cut(s) 259, 274, 322, 455, 503, 770
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 3 cut(s) 269, 340, 509
AluI AGCT 3 cut(s) 269, 340, 509
AlwI GGATC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 672
AoxI GGCC 1 cut(s) 436
ApeKI GCWGC 2 cut(s) 65, 77
ApoI RAATTY 5 cut(s) 129, 195, 316, 570, 634
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AseI ATTAAT 1 cut(s) 384
AsiGI ACCGGT 1 cut(s) 56
AspA2I CCTAGG 1 cut(s) 643
AspS9I GGNCC 3 cut(s) 83, 442, 743
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 731
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 3 cut(s) 83, 442, 743
AvrII CCTAGG 1 cut(s) 643
BauI CACGAG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 64, 77
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 4 cut(s) 216, 576, 644, 800
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 3 cut(s) 66, 78, 549
BlnI CCTAGG 1 cut(s) 643
BlsI GCNGC 3 cut(s) 67, 79, 550
Bme1390I CCNGG 2 cut(s) 152, 440
Bme18I GGWCC 3 cut(s) 83, 442, 743
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 3 cut(s) 83, 442, 743
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 2 cut(s) 152, 440
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 150, 643
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 4 cut(s) 29, 80, 99, 629
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 718
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 150, 643
BseLI CCNNNNNNNGG 4 cut(s) 29, 80, 99, 629
BseMII CTCAG 4 cut(s) 296, 390, 566, 638
BseNI ACTGG 1 cut(s) 718
BseXI GCAGC 2 cut(s) 64, 77
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 438
BshTI ACCGGT 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 2 cut(s) 57, 152
BslFI GGGAC 1 cut(s) 776
BslI CCNNNNNNNGG 4 cut(s) 29, 80, 99, 629
BsmFI GGGAC 1 cut(s) 776
BsnI GGCC 1 cut(s) 438
BsoBI CYCGRG 1 cut(s) 672
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 549
BspANI GGCC 1 cut(s) 438
BspCNI CTCAG 4 cut(s) 295, 391, 565, 637
BspHI TCATGA 2 cut(s) 250, 780
BspLI GGNNCC 1 cut(s) 444
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 1 cut(s) 14
BsrBI CCGCTC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 718
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 150, 643
BssMI GATC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 520
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 6 cut(s) 282, 399, 552, 624, 663, 830
BstENI CCTNNNNNAGG 1 cut(s) 78
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 74, 590
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 2 cut(s) 150, 438
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 64, 77
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 438
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 436
CciI TCATGA 2 cut(s) 250, 780
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 83, 442, 743
Csp6I GTAC 1 cut(s) 54
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 5 cut(s) 251, 590, 698, 726, 781
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 6 cut(s) 282, 399, 552, 624, 663, 830
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 520
EarI CTCTTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 3 cut(s) 83, 442, 743
Eco88I CYCGRG 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoRI GAATTC 2 cut(s) 129, 634
EcoRII CCWGG 1 cut(s) 438
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 5 cut(s) 254, 593, 701, 729, 784
FaqI GGGAC 1 cut(s) 776
FatI CATG 5 cut(s) 250, 589, 697, 725, 780
Fnu4HI GCNGC 3 cut(s) 66, 78, 549
Fsp4HI GCNGC 3 cut(s) 66, 78, 549
FspBI CTAG 4 cut(s) 216, 576, 644, 800
GluI GCNGC 3 cut(s) 66, 78, 549
HaeIII GGCC 1 cut(s) 438
HapII CCGG 2 cut(s) 57, 152
Hin1II CATG 5 cut(s) 254, 593, 701, 729, 784
HindIII AAGCTT 2 cut(s) 267, 507
HinfI GANTC 4 cut(s) 182, 203, 737, 766
HpaII CCGG 2 cut(s) 57, 152
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 7 cut(s) 285, 348, 396, 524, 555, 627, 706
Hpy188III TCNNGA 4 cut(s) 251, 741, 763, 781
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 5 cut(s) 112, 449, 527, 569, 769
HpyCH4IV ACGT 1 cut(s) 786
HpyCH4V TGCA 4 cut(s) 65, 80, 302, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 590
HpyF3I CTNAG 6 cut(s) 282, 399, 552, 624, 663, 830
HpySE526I ACGT 1 cut(s) 786
Hsp92II CATG 5 cut(s) 254, 593, 701, 729, 784
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 2 cut(s) 64, 77
LweI GCATC 1 cut(s) 402
MaeI CTAG 4 cut(s) 216, 576, 644, 800
MaeII ACGT 1 cut(s) 786
MaeIII GTNAC 2 cut(s) 208, 233
MalI GATC 1 cut(s) 21
MbiI CCGCTC 1 cut(s) 551
MboI GATC 1 cut(s) 19
MboII GAAGA 4 cut(s) 125, 127, 334, 537
MflI RGATCY 1 cut(s) 19
MnlI CCTC 9 cut(s) 117, 148, 456, 609, 615, 621, 627, 633, 668
MseI TTAA 2 cut(s) 342, 384
MspI CCGG 2 cut(s) 57, 152
MspR9I CCNGG 2 cut(s) 152, 440
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 2 cut(s) 74, 590
NciI CCSGG 1 cut(s) 152
NdeII GATC 1 cut(s) 19
NlaIII CATG 5 cut(s) 254, 593, 701, 729, 784
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 672
PagI TCATGA 2 cut(s) 250, 780
PciI ACATGT 1 cut(s) 697
PfeI GAWTC 4 cut(s) 182, 203, 737, 766
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 3 cut(s) 67, 79, 550
PscI ACATGT 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 384
PsiI TTATAA 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 786
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 3 cut(s) 83, 442, 743
PspXI VCTCGAGB 1 cut(s) 672
PstI CTGCAG 1 cut(s) 82
PsuI RGATCY 1 cut(s) 19
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 342, 384
SatI GCNGC 3 cut(s) 66, 78, 549
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 3 cut(s) 83, 442, 743
ScrFI CCNGG 2 cut(s) 152, 440
SfaNI GCATC 1 cut(s) 402
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 672
SinI GGWCC 3 cut(s) 83, 442, 743
SlaI CTCGAG 1 cut(s) 672
SmlI CTYRAG 2 cut(s) 137, 672
SmoI CTYRAG 2 cut(s) 137, 672
SsiI CCGC 1 cut(s) 549
SspMI CTAG 4 cut(s) 216, 576, 644, 800
StyD4I CCNGG 2 cut(s) 150, 438
StyI CCWWGG 1 cut(s) 643
TaiI ACGT 1 cut(s) 789
TaqI TCGA 1 cut(s) 673
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 4 cut(s) 182, 203, 737, 766
Tru1I TTAA 2 cut(s) 342, 384
Tru9I TTAA 2 cut(s) 342, 384
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 65, 77
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 6 cut(s) 111, 239, 267, 546, 551, 797
VpaK11BI GGWCC 3 cut(s) 83, 442, 743
VspI ATTAAT 1 cut(s) 384
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 5 cut(s) 129, 195, 316, 570, 634
XceI RCATGY 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 672
XmaJI CCTAGG 1 cut(s) 643
XspI CTAG 4 cut(s) 216, 576, 644, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.