Rmu_sc0004618.1_g000048
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004618.1
OG0000146
Physical Location & Seq
Forward (+)
185244 .. 186967
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004618.1_g000048.1.cds

Sequence Viewer

Length: 669 bp
atgactgatgaggctgagattgatcagtggcgaccaaacatattgaaaaatattgaggatatcacctggtacgtcaaggagaaggagttggagtgcgtgcaccagtttctgactggattagatgctagacatgacagtgccaagggagagctgttacgtcggcaagagccaccttcccttattgaggcttttacgtacatccgtaaggatgagtctcagcaggatagcgtaaagggagtcctttttgaaatctctagcctaactgtccaagctaagccttcacgagatcaaggtccacctcttggattcataacaacacattcaggacttcgtcccatgactcagtctccttcatcaagagtcaattctgggttagtaaaaaatactggatatatcaaggagattttctataagttggcagggaaccacttaacgcgtcaagcatttgatcaacccgctagtagccccgaggcaaatttcagcagcaatccttggccttcagcggcaaacccgctagttgcccagcggcaaccttcagcggcaaacccgctagtagcccagtggcaaatttcagcggcaaacccgctagtagccccagcggcaaatttcagctgcaagcccgctagttgcccagcggcaacccttggccttcagaggcaaacccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 rve

Protein Analysis

222

Amino Acids

24.5

Weight (kDa)

7.73

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 436
AcsI RAATTY 3 cut(s) 475, 567, 604
AcuI CTGAAG 3 cut(s) 483, 519, 635
AfaI GTAC 2 cut(s) 71, 197
AfiI CCNNNNNNNGG 2 cut(s) 184, 302
AflIII ACRYGT 1 cut(s) 434
AgsI TTSAA 2 cut(s) 46, 248
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 3 cut(s) 151, 272, 612
AluI AGCT 3 cut(s) 151, 272, 612
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 2 cut(s) 219, 351
Alw44I GTGCAC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 2 cut(s) 494, 646
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 483, 612
ApoI RAATTY 3 cut(s) 475, 567, 604
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 102
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 495, 599
BciT130I CCWGG 1 cut(s) 67
BclI TGATCA 2 cut(s) 22, 448
BcoDI GTCTC 2 cut(s) 219, 351
BfaI CTAG 8 cut(s) 126, 255, 459, 515, 551, 587, 624, 667
BglI GCCNNNNNGGC 1 cut(s) 599
BisI GCNGC 8 cut(s) 484, 504, 527, 540, 576, 600, 613, 636
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 8 cut(s) 485, 505, 528, 541, 577, 601, 614, 637
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 67
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 553
Bpu1102I GCTNAGC 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 141, 468, 491, 643
BsaXI ACNNNNNCTCC 6 cut(s) 71, 77, 101, 107, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 302
Bse1I ACTGG 4 cut(s) 103, 118, 391, 559
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 4 cut(s) 141, 468, 491, 643
BseGI GGATG 2 cut(s) 198, 214
BseLI CCNNNNNNNGG 2 cut(s) 184, 302
BseMII CTCAG 3 cut(s) 6, 230, 356
BseNI ACTGG 4 cut(s) 103, 118, 391, 559
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 2 cut(s) 495, 599
BseYI CCCAGC 3 cut(s) 522, 595, 631
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 2 cut(s) 496, 648
BsiHKAI GWGCWC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 184, 302
BsmAI GTCTC 2 cut(s) 219, 351
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 2 cut(s) 496, 648
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 3 cut(s) 22, 286, 448
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 496, 648
BspCNI CTCAG 3 cut(s) 7, 229, 355
BspFNI CGCG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 425
BsrI ACTGG 4 cut(s) 103, 118, 391, 559
BssECI CCNNGG 4 cut(s) 141, 468, 491, 643
BssMI GATC 3 cut(s) 22, 286, 448
BssSI CACGAG 1 cut(s) 282
BssT1I CCWWGG 3 cut(s) 141, 491, 643
Bst2BI CACGAG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 2 cut(s) 137, 265
BstBAI YACGTR 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 98, 617, 621
BstDEI CTNAG 4 cut(s) 15, 216, 273, 342
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 198, 214
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 3 cut(s) 25, 289, 451
BstMAI GTCTC 2 cut(s) 219, 351
BstMBI GATC 3 cut(s) 22, 286, 448
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstSLI GKGCMC 1 cut(s) 102
BstSNI TACGTA 1 cut(s) 195
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 2 cut(s) 495, 599
BsuRI GGCC 2 cut(s) 496, 648
BtsCI GGATG 2 cut(s) 198, 214
BtsIMutI CAGTG 3 cut(s) 32, 142, 566
Cac8I GCNNGC 3 cut(s) 98, 617, 621
CaiI CAGNNNCTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 1 cut(s) 425
CsiI ACCWGGT 1 cut(s) 65
Csp6I GTAC 2 cut(s) 70, 196
CviAII CATG 2 cut(s) 131, 337
CviQI GTAC 2 cut(s) 70, 196
DdeI CTNAG 4 cut(s) 15, 216, 273, 342
DpnI GATC 3 cut(s) 24, 288, 450
DpnII GATC 3 cut(s) 22, 286, 448
Eco105I TACGTA 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 141, 491, 643
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 3 cut(s) 483, 519, 635
Eco88I CYCGRG 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 65
EcoRV GATATC 1 cut(s) 61
EcoT14I CCWWGG 3 cut(s) 141, 491, 643
ErhI CCWWGG 3 cut(s) 141, 491, 643
FaeI CATG 2 cut(s) 134, 340
FaiI YATR 6 cut(s) 41, 132, 311, 338, 393, 411
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 130, 336
FauI CCCGC 5 cut(s) 463, 519, 555, 591, 628
FbaI TGATCA 2 cut(s) 22, 448
Fnu4HI GCNGC 8 cut(s) 484, 504, 527, 540, 576, 600, 613, 636
FokI GGATG 2 cut(s) 185, 221
Fsp4HI GCNGC 8 cut(s) 484, 504, 527, 540, 576, 600, 613, 636
FspBI CTAG 8 cut(s) 126, 255, 459, 515, 551, 587, 624, 667
GluI GCNGC 8 cut(s) 484, 504, 527, 540, 576, 600, 613, 636
GsaI CCCAGC 3 cut(s) 526, 599, 635
HaeIII GGCC 2 cut(s) 496, 648
HgaI GACGC 1 cut(s) 425
Hin1II CATG 2 cut(s) 134, 340
HinfI GANTC 5 cut(s) 212, 237, 306, 340, 360
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 2 cut(s) 100, 296
Hpy188I TCNGA 2 cut(s) 111, 654
Hpy188III TCNNGA 3 cut(s) 282, 324, 357
Hpy8I GTNNAC 2 cut(s) 100, 296
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 7 cut(s) 76, 183, 288, 360, 507, 543, 659
HpyCH4III ACNGT 2 cut(s) 137, 265
HpyCH4IV ACGT 3 cut(s) 72, 157, 194
HpyCH4V TGCA 2 cut(s) 100, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 4 cut(s) 15, 216, 273, 342
HpySE526I ACGT 3 cut(s) 72, 157, 194
Hsp92II CATG 2 cut(s) 134, 340
Ksp22I TGATCA 2 cut(s) 22, 448
Kzo9I GATC 3 cut(s) 22, 286, 448
Lsp1109I GCAGC 2 cut(s) 495, 599
LweI GCATC 1 cut(s) 112
MabI ACCWGGT 1 cut(s) 65
MaeI CTAG 8 cut(s) 126, 255, 459, 515, 551, 587, 624, 667
MaeII ACGT 3 cut(s) 72, 157, 194
MaeIII GTNAC 1 cut(s) 153
MalI GATC 3 cut(s) 24, 288, 450
MboI GATC 3 cut(s) 22, 286, 448
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 4 cut(s) 364, 475, 567, 604
MluI ACGCGT 1 cut(s) 434
MlyI GAGTC 4 cut(s) 221, 246, 334, 369
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 6 cut(s) 4, 49, 178, 309, 463, 648
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 7 cut(s) 503, 526, 539, 575, 599, 612, 635
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 599
NdeII GATC 3 cut(s) 22, 286, 448
NlaIII CATG 2 cut(s) 134, 340
NlaIV GGNNCC 1 cut(s) 425
PfeI GAWTC 1 cut(s) 306
PflFI GACNNNGTC 2 cut(s) 330, 343
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 8 cut(s) 485, 505, 528, 541, 577, 601, 614, 637
PleI GAGTC 4 cut(s) 220, 245, 334, 368
PpsI GAGTC 4 cut(s) 220, 245, 334, 368
Ppu21I YACGTR 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 3 cut(s) 522, 595, 631
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 109
PsyI GACNNNGTC 2 cut(s) 330, 343
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 2 cut(s) 71, 197
RsaNI GTAC 2 cut(s) 70, 196
RseI CAYNNNNRTG 1 cut(s) 135
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 8 cut(s) 484, 504, 527, 540, 576, 600, 613, 636
Sau3AI GATC 3 cut(s) 22, 286, 448
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 4 cut(s) 221, 246, 334, 369
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 102
SexAI ACCWGGT 1 cut(s) 65
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 135
SnaBI TACGTA 1 cut(s) 195
Sse9I AATT 4 cut(s) 364, 475, 567, 604
SspI AATATT 1 cut(s) 52
SspMI CTAG 8 cut(s) 126, 255, 459, 515, 551, 587, 624, 667
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 3 cut(s) 141, 491, 643
TaaI ACNGT 2 cut(s) 137, 265
TaiI ACGT 3 cut(s) 75, 160, 197
TasI AATT 4 cut(s) 364, 475, 567, 604
TauI GCSGC 6 cut(s) 506, 529, 542, 578, 602, 638
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 3 cut(s) 32, 142, 566
TseI GCWGC 2 cut(s) 483, 612
TspDTI ATGAA 2 cut(s) 298, 342
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 3 cut(s) 32, 142, 566
Tth111I GACNNNGTC 2 cut(s) 330, 343
Van91I CCANNNNNTGG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 182
XapI RAATTY 3 cut(s) 475, 567, 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 8 cut(s) 126, 255, 459, 515, 551, 587, 624, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.