Rmu_sc0002211.1_g000006

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002211.1
OG0000146
Physical Location & Seq
Reverse (-)
16024 .. 16542
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002211.1_g000006.1.cds

Sequence Viewer

Length: 519 bp
atgttccaggagattgatcaaagggtggcctctcataatgataatgttgcaactgtagttcaagaaacttcagcaatgtctcggctgcgtgttcacatgtttttgagtggacttgacccagagtatgatcaggtgcgtggagaaatcctgcacaaggagcctaaattctccttggagcagagctatgctcacattcacaaggtccaatcagagaaacaagctatgaggtgttcggtacctaccgaatcttctgttatggctgttcaacgcaaaccgggtcctcctctaggcttctcaggtctttctccacgccatcctcaaggtaaaccaaacccatatgcaaaaaaaaaaagcgttatctatggggaattaggtcatagcaaggagcgatgctatgaagtgattggttaccctgattggtgggacttcaccaagaaaccgcgaaagaatctaggtaaggcagccattgctactacagaggaagagcatctagacaatgcctccgctaatgtagcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2

Protein Analysis

172

Amino Acids

19.39

Weight (kDa)

8.48

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 442
AciI CCGC 2 cut(s) 440, 504
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 154, 287
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 2 cut(s) 62, 266
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 183, 221
AluI AGCT 2 cut(s) 183, 221
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 85, 461
ApoI RAATTY 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 202, 278
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 2 cut(s) 202, 278
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 72, 473
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 8
BclI TGATCA 2 cut(s) 16, 127
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 3 cut(s) 287, 452, 491
BfmI CTRYAG 2 cut(s) 54, 474
BisI GCNGC 2 cut(s) 86, 462
BlsI GCNGC 2 cut(s) 87, 463
Bme1390I CCNGG 2 cut(s) 8, 276
Bme18I GGWCC 2 cut(s) 202, 278
BmgT120I GGNCC 2 cut(s) 202, 278
BmiI GGNNCC 3 cut(s) 159, 237, 279
BmrFI CCNGG 2 cut(s) 8, 276
BmsI GCATC 2 cut(s) 380, 496
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 287
Bse3DI GCAATG 2 cut(s) 81, 465
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 154, 287
BseMI GCAATG 2 cut(s) 81, 465
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 72, 473
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 275
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 154, 287
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 1 cut(s) 29
Bsp143I GATC 2 cut(s) 16, 127
BspACI CCGC 2 cut(s) 440, 504
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 308
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 159, 237, 279
BspQI GCTCTTC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 81, 465
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 16, 127
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 1 cut(s) 295
BstEII GGTNACC 1 cut(s) 407
BstENI CCTNNNNNAGG 2 cut(s) 152, 285
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 442
BstKTI GATC 2 cut(s) 19, 130
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 16, 127
BstMWI GCNNNNNNNGC 3 cut(s) 157, 467, 512
BstNI CCWGG 1 cut(s) 8
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 6, 274
BstSFI CTRYAG 2 cut(s) 54, 474
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 72, 473
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 202, 278
Csp6I GTAC 1 cut(s) 236
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 29, 85, 160, 183, 221, 260, 291, 464
CviKI_1 RGCY 8 cut(s) 29, 85, 160, 183, 221, 260, 291, 464
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 295
DpnI GATC 2 cut(s) 18, 129
DpnII GATC 2 cut(s) 16, 127
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 2 cut(s) 202, 278
Eco57I CTGAAG 1 cut(s) 54
Eco91I GGTNACC 1 cut(s) 407
EcoNI CCTNNNNNAGG 2 cut(s) 152, 285
EcoO109I RGGNCCY 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 100
FaqI GGGAC 1 cut(s) 437
FatI CATG 1 cut(s) 96
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 2 cut(s) 16, 127
Fnu4HI GCNGC 2 cut(s) 86, 462
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 2 cut(s) 86, 462
FspBI CTAG 3 cut(s) 287, 452, 491
GluI GCNGC 2 cut(s) 86, 462
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 275
Hin1II CATG 1 cut(s) 100
HinfI GANTC 2 cut(s) 245, 448
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 3 cut(s) 94, 110, 326
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 2 cut(s) 62, 491
Hpy8I GTNNAC 3 cut(s) 94, 110, 326
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 50, 151, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 467, 512
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 1 cut(s) 100
KpnI GGTACC 1 cut(s) 239
Ksp22I TGATCA 2 cut(s) 16, 127
Kzo9I GATC 2 cut(s) 16, 127
LguI GCTCTTC 1 cut(s) 477
LmnI GCTCC 3 cut(s) 157, 175, 385
LpnPI CCDG 7 cut(s) 20, 116, 132, 161, 282, 288, 426
Lsp1109I GCAGC 2 cut(s) 72, 473
LweI GCATC 2 cut(s) 380, 496
MaeI CTAG 3 cut(s) 287, 452, 491
MaeIII GTNAC 1 cut(s) 407
MalI GATC 2 cut(s) 18, 129
MboI GATC 2 cut(s) 16, 127
MboII GAAGA 2 cut(s) 240, 494
MluCI AATT 2 cut(s) 164, 368
MnlI CCTC 7 cut(s) 40, 219, 291, 294, 327, 472, 511
MspI CCGG 1 cut(s) 275
MspR9I CCNGG 2 cut(s) 8, 276
MvaI CCWGG 1 cut(s) 8
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 3 cut(s) 157, 467, 512
NciI CCSGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 337
NdeII GATC 2 cut(s) 16, 127
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 3 cut(s) 159, 237, 279
NmeAIII GCCGAG 1 cut(s) 61
NspI RCATGY 1 cut(s) 100
PciI ACATGT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 245, 448
PfoI TCCNGGA 1 cut(s) 6
PkrI GCNGC 2 cut(s) 87, 463
PpuMI RGGWCCY 1 cut(s) 278
PscI ACATGT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 3 cut(s) 159, 237, 279
PspPI GGNCC 2 cut(s) 202, 278
PspPPI RGGWCCY 1 cut(s) 278
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SapI GCTCTTC 1 cut(s) 477
SatI GCNGC 2 cut(s) 86, 462
Sau3AI GATC 2 cut(s) 16, 127
Sau96I GGNCC 2 cut(s) 202, 278
ScrFI CCNGG 2 cut(s) 8, 276
SfaNI GCATC 2 cut(s) 380, 496
SfcI CTRYAG 2 cut(s) 54, 474
SinI GGWCC 2 cut(s) 202, 278
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 164, 368
SsiI CCGC 2 cut(s) 440, 504
SspMI CTAG 3 cut(s) 287, 452, 491
StyD4I CCNGG 2 cut(s) 6, 274
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 55
TasI AATT 2 cut(s) 164, 368
TfiI GAWTC 2 cut(s) 245, 448
TseI GCWGC 2 cut(s) 85, 461
TspDTI ATGAA 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 202, 278
XagI CCTNNNNNAGG 2 cut(s) 152, 285
XapI RAATTY 1 cut(s) 164
XbaI TCTAGA 1 cut(s) 490
XceI RCATGY 1 cut(s) 100
XspI CTAG 3 cut(s) 287, 452, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.