Rmu_sc0004724.1_g000005

Reverse transcriptase (RNA-dependent DNA polymerase)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004724.1
Physical Location & Seq
Forward (+)
16674 .. 17108
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004724.1_g000005.1.cds

Sequence Viewer

Length: 435 bp
atggcaaaacttatgaagatccatattcaggggattggaaagtggagttatgttaccggtagtgcagtaagaccggctgtaggttcaaaagttgatgaatgggatacggcaaataataatgtgatgggaattcttctcaaagctatgactccggaggagcttaatcagagaaaccctaatcctatgacttgtgcagctgatattaattcctatcggaatgaccaggacaagatgcgtgaccatattattcttgctggattggacccttactttgaaggggcaaagaatgagttattgcgtcttgcaactccacctacgttggagcaagcttttgcttatatcagaagagatgaaggtaacaaggctgccgctcagtaccttcatactgaaatttctagtttagcaatccatgctacacctccatctcaaccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

144

Amino Acids

15.96

Weight (kDa)

6.41

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 371
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 1 cut(s) 369
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 129, 390
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 28, 80
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 2 cut(s) 87, 275
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 4 cut(s) 143, 160, 197, 329
AluI AGCT 4 cut(s) 143, 160, 197, 329
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 194, 365
ApoI RAATTY 2 cut(s) 129, 390
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AseI ATTAAT 1 cut(s) 204
AsiGI ACCGGT 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 262
AvaII GGWCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 206, 352
BccI CCATC 2 cut(s) 118, 430
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 97
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 78
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 3 cut(s) 195, 366, 369
BlsI GCNGC 3 cut(s) 196, 367, 370
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 222
BsaWI WCCGGW 2 cut(s) 56, 151
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 80
Bse118I RCCGGY 2 cut(s) 56, 73
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 28, 80
BseMII CTCAG 1 cut(s) 386
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 206, 352
BsgI GTGCAG 2 cut(s) 84, 213
BshTI ACCGGT 1 cut(s) 56
BsiSI CCGG 3 cut(s) 57, 74, 152
BslI CCNNNNNNNGG 2 cut(s) 28, 80
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 13
BsrBI CCGCTC 1 cut(s) 371
BsrFI RCCGGY 2 cut(s) 56, 73
BssAI RCCGGY 2 cut(s) 56, 73
BssMI GATC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 224
Bst6I CTCTTC 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 372, 432
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 206, 352
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuI GTATCC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 327
Cfr10I RCCGGY 2 cut(s) 56, 73
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 376
CspAI ACCGGT 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 1 cut(s) 410
CviJI RGCY 6 cut(s) 77, 143, 160, 197, 329, 365
CviKI_1 RGCY 6 cut(s) 77, 143, 160, 197, 329, 365
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 372, 432
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 413
FaiI YATR 9 cut(s) 14, 24, 51, 146, 185, 243, 339, 384, 411
FatI CATG 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 195, 366, 369
Fsp4HI GCNGC 3 cut(s) 195, 366, 369
FspBI CTAG 1 cut(s) 396
GluI GCNGC 3 cut(s) 195, 366, 369
HapII CCGG 3 cut(s) 57, 74, 152
HgaI GACGC 1 cut(s) 287
Hin1II CATG 1 cut(s) 413
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 1 cut(s) 148
HpaII CCGG 3 cut(s) 57, 74, 152
Hpy188I TCNGA 3 cut(s) 168, 216, 344
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 269, 347, 389
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 65, 194, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 372, 432
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 157, 322
LpnPI CCDG 7 cut(s) 14, 70, 87, 165, 209, 236, 240
Lsp1109I GCAGC 2 cut(s) 206, 352
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 396
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 52, 236, 356
MalI GATC 1 cut(s) 20
MbiI CCGCTC 1 cut(s) 371
MboI GATC 1 cut(s) 18
MboII GAAGA 3 cut(s) 28, 125, 357
MflI RGATCY 1 cut(s) 18
MluCI AATT 3 cut(s) 129, 205, 390
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 2 cut(s) 148, 429
MroI TCCGGA 1 cut(s) 151
MseI TTAA 2 cut(s) 162, 204
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 3 cut(s) 57, 74, 152
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 410
NdeII GATC 1 cut(s) 18
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 236
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 3 cut(s) 196, 367, 370
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PshBI ATTAAT 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SaqAI TTAA 2 cut(s) 162, 204
SatI GCNGC 3 cut(s) 195, 366, 369
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 224
SfaNI GCATC 1 cut(s) 222
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 1 cut(s) 262
Sse9I AATT 3 cut(s) 129, 205, 390
SsiI CCGC 1 cut(s) 369
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 320
TasI AATT 3 cut(s) 129, 205, 390
TauI GCSGC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 162, 204
Tru9I TTAA 2 cut(s) 162, 204
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 194, 365
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 29, 111, 366, 371
VpaK11BI GGWCC 1 cut(s) 262
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 2 cut(s) 129, 390
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.