Rmu_sc0010244.1_g000009
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010244.1
OG0000146
Physical Location & Seq
Forward (+)
19846 .. 20559
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010244.1_g000009.1.cds

Sequence Viewer

Length: 714 bp
atggcagaggcttatgaagatccatattcaaggattggcaagtggggatatgttactggtagcatcacaaagccattagaaggaccaaaagcagaagcatgggatacggcaaacaccaatgtgatagggattcttctcaaatctatgactccagaagtgatgcaattgtttgcacattatgattctcccaaggctatatgggagtctgctgctgctacttattatgatgggagtgattttgcccgtattcatgaattaaactacaaagccttcaagatgactcagagtggacaatctgttgcaactttctatgcaagcatgaggaccatttggcaagaacttggtcagagacaccctaatcctatgacgtgtgaagctgatattaaaatataccaagcagagcaagataagatacgtgtccacatcttccttggtggtttggattcacacttggagggcgcgaagaatgagttgctgcgccttaccactccaccaaccttggagcaagcctttgcctacatactaaaagatgaatccaacaaggcagccacaaagaatctacacactaaaatttctagtttgatagttcaggccacaccttccccactcatgactttgtctcctcagggtggatttcctcagtatcagtccaacaaacaaggttaccaactcggtcataactataataggggagcagctccattcaacaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

237

Amino Acids

26.48

Weight (kDa)

6.66

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000146)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19561 FvH4_1g25371 FvH4_1g25961 FvH4_2g00352 FvH4_2g00861 FvH4_2g04952 FvH4_2g05413 FvH4_2g07531 FvH4_2g08961 FvH4_2g25141 FvH4_2g27292 FvH4_3g18164 FvH4_3g19921 FvH4_3g43870 FvH4_4g14441 FvH4_4g15581 FvH4_4g15582 FvH4_4g16890 FvH4_4g19782 FvH4_4g33444 FvH4_4g33921 FvH4_5g22281 FvH4_5g22282 FvH4_5g32571 FvH4_5g37451 FvH4_5g39631 FvH4_6g04721 FvH4_6g11661 FvH4_6g20571 FvH4_6g32791 FvH4_7g23184
prunus_persica Prupe.1G090900_v2.0.a1 Prupe.1G241200_v2.0.a1 Prupe.1G534100_v2.0.a1 Prupe.3G076700_v2.0.a1 Prupe.4G150800_v2.0.a1 Prupe.4G181800_v2.0.a1 Prupe.4G240900_v2.0.a1 Prupe.4G247600_v2.0.a1 Prupe.6G115900_v2.0.a1 Prupe.6G327500_v2.0.a1 Prupe.8G071700_v2.0.a1
pyrus_communis pycom06g11480 pycom10g08330 pycom15g04320 pycom15g04350 pycom15g12620 pycom2874g00060
rosa_chinensis RchiOBHm_Chr1g0317241 RchiOBHm_Chr1g0341801 RchiOBHm_Chr1g0341931 RchiOBHm_Chr1g0359621 RchiOBHm_Chr2g0113741 RchiOBHm_Chr2g0117261 RchiOBHm_Chr2g0138831 RchiOBHm_Chr2g0141421 RchiOBHm_Chr2g0145281 RchiOBHm_Chr2g0152991 RchiOBHm_Chr3g0448001 RchiOBHm_Chr3g0450981 RchiOBHm_Chr3g0455161 RchiOBHm_Chr3g0457401 RchiOBHm_Chr3g0460001 RchiOBHm_Chr4g0387431 RchiOBHm_Chr4g0388741 RchiOBHm_Chr4g0444201 RchiOBHm_Chr4g0444261 RchiOBHm_Chr5g0010221 RchiOBHm_Chr6g0271721 RchiOBHm_Chr6g0274641 RchiOBHm_Chr6g0294691 RchiOBHm_Chr7g0237031 RchiOBHm_Chr7g0238461 RchiOBHm_Chr7g0239981
rosa_laevigata RLG00000009017
rosa_multiflora Rmu_co7986768.1_g000001 Rmu_co8302239.1_g000001 Rmu_co8485799.1_g000001 Rmu_sc0000061.1_g000013 Rmu_sc0000303.1_g000034 Rmu_sc0000303.1_g000035 Rmu_sc0000315.1_g000017 Rmu_sc0000349.1_g000003 Rmu_sc0000498.1_g000068 Rmu_sc0000508.1_g000014 Rmu_sc0000602.1_g000001 Rmu_sc0000633.1_g000002 Rmu_sc0000638.1_g000030 Rmu_sc0000756.1_g000016 Rmu_sc0000756.1_g000017 Rmu_sc0000785.1_g000037 Rmu_sc0000795.1_g000017 Rmu_sc0000796.1_g000030 Rmu_sc0000863.1_g000023 Rmu_sc0000920.1_g000021 Rmu_sc0000960.1_g000015 Rmu_sc0000982.1_g000102 Rmu_sc0001036.1_g000008 Rmu_sc0001036.1_g000009 Rmu_sc0001643.1_g000029 Rmu_sc0001687.1_g000026 Rmu_sc0001708.1_g000037 Rmu_sc0001768.1_g000015 Rmu_sc0001790.1_g000022 Rmu_sc0002180.1_g000007 Rmu_sc0002211.1_g000006 Rmu_sc0002270.1_g000010 Rmu_sc0002404.1_g000031 Rmu_sc0002858.1_g000016 Rmu_sc0003063.1_g000028 Rmu_sc0003730.1_g000017 Rmu_sc0004087.1_g000020 Rmu_sc0004618.1_g000048 Rmu_sc0004724.1_g000005 Rmu_sc0005167.1_g000036 Rmu_sc0005781.1_g000003 Rmu_sc0005878.1_g000012 Rmu_sc0006011.1_g000003 Rmu_sc0006343.1_g000011 Rmu_sc0006573.1_g000007 Rmu_sc0006599.1_g000007 Rmu_sc0006803.1_g000014 Rmu_sc0006836.1_g000002 Rmu_sc0006849.1_g000002 Rmu_sc0007109.1_g000009 Rmu_sc0009268.1_g000016 Rmu_sc0009618.1_g000017 Rmu_sc0009674.1_g000009 Rmu_sc0010244.1_g000009 Rmu_sc0011151.1_g000004 Rmu_sc0011356.1_g000001 Rmu_sc0011674.1_g000002 Rmu_sc0011778.1_g000016 Rmu_sc0012342.1_g000001 Rmu_sc0012467.1_g000002 Rmu_sc0012574.1_g000003 Rmu_sc0012913.1_g000005 Rmu_sc0013612.1_g000020 Rmu_sc0014824.1_g000001 Rmu_sc0017869.1_g000002 Rmu_sc0018085.1_g000003 Rmu_sc0024789.1_g000001 Rmu_sc0025106.1_g000013 Rmu_sc0034502.1_g000001 Rmu_sc0034547.1_g000001 Rmu_sc0035094.1_g000001 Rmu_sc0035095.1_g000001 Rmu_ssc0000100.1_g000027 Rmu_ssc0000244.1_g000005 Rmu_ssc0000371.1_g000029 Rmu_ssc0000381.1_g000004
rosa_roxburghii Rroxscaffold_1G00015480 Rroxscaffold_1G00023580 Rroxscaffold_1G00039340 Rroxscaffold_1G00047080 Rroxscaffold_2G00095820 Rroxscaffold_2G00125200 Rroxscaffold_2G00128330 Rroxscaffold_3G00270860
rosa_rugosa Rorug06G0120700
rosa_samantha Rh3BG173100 Rh6AG089600 Rh7AG488100 Rh7DG389600
rosa_wichuraiana Rw0G001150 Rw0G001990 Rw0G002010 Rw0G019540 Rw1G013730 Rw1G024110 Rw1G029190 Rw2G018850 Rw2G021090 Rw2G022260 Rw2G023180 Rw2G027280 Rw3G010190 Rw3G020660 Rw3G029380 Rw4G002390 Rw4G002690 Rw4G033260 Rw5G011960 Rw5G023110 Rw5G025250 Rw5G028950 Rw5G033740 Rw5G033950 Rw5G037900 Rw6G009640 Rw6G011620 Rw6G027720 Rw7G010680 Rw7G042070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 461
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 80, 629
AflIII ACRYGT 2 cut(s) 368, 415
AgsI TTSAA 3 cut(s) 30, 274, 706
AjiI CACGTC 1 cut(s) 369
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 2 cut(s) 377, 698
AluI AGCT 2 cut(s) 377, 698
Alw26I GTCTC 2 cut(s) 343, 624
AlwI GGATC 1 cut(s) 14
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 5 cut(s) 209, 212, 475, 545, 695
ApoI RAATTY 1 cut(s) 570
AspLEI GCGC 2 cut(s) 461, 480
AspS9I GGNCC 2 cut(s) 83, 324
AvaII GGWCC 2 cut(s) 83, 324
AxyI CCTNAGG 1 cut(s) 624
BbvI GCAGC 5 cut(s) 196, 199, 462, 557, 707
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 123
BciVI GTATCC 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 343, 624
BfaI CTAG 1 cut(s) 576
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 5 cut(s) 210, 213, 476, 546, 696
BlsI GCNGC 5 cut(s) 211, 214, 477, 547, 697
Bme18I GGWCC 2 cut(s) 83, 324
BmgBI CACGTC 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 83, 324
BmsI GCATC 2 cut(s) 72, 150
BpmI CTGGAG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 416
BsaJI CCNNGG 3 cut(s) 189, 430, 498
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 629
Bse1I ACTGG 1 cut(s) 61
Bse21I CCTNAGG 1 cut(s) 624
BseDI CCNNGG 3 cut(s) 189, 430, 498
BseLI CCNNNNNNNGG 2 cut(s) 80, 629
BseMII CTCAG 3 cut(s) 296, 638, 653
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 612
BseXI GCAGC 5 cut(s) 196, 199, 462, 557, 707
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 80, 629
BsmAI GTCTC 2 cut(s) 343, 624
BsnI GGCC 1 cut(s) 593
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 3 cut(s) 295, 637, 652
BspFNI CGCG 1 cut(s) 461
BspHI TCATGA 2 cut(s) 250, 609
BspPI GGATC 1 cut(s) 14
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 3 cut(s) 189, 430, 498
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 3 cut(s) 189, 430, 498
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 316, 507
BstDEI CTNAG 3 cut(s) 282, 624, 639
BstEII GGTNACC 1 cut(s) 662
BstFNI CGCG 1 cut(s) 461
BstHHI GCGC 2 cut(s) 461, 480
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 2 cut(s) 343, 624
BstMBI GATC 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 662
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 5 cut(s) 196, 199, 462, 557, 707
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 624
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 593
BtrI CACGTC 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 316, 507
CciI TCATGA 2 cut(s) 250, 609
CfoI GCGC 2 cut(s) 461, 480
Cfr13I GGNCC 2 cut(s) 83, 324
CspCI CAANNNNNGTGG 2 cut(s) 480, 515
CviAII CATG 4 cut(s) 99, 251, 319, 610
CviJI RGCY 9 cut(s) 11, 73, 194, 269, 377, 509, 548, 593, 698
CviKI_1 RGCY 9 cut(s) 11, 73, 194, 269, 377, 509, 548, 593, 698
DdeI CTNAG 3 cut(s) 282, 624, 639
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eco130I CCWWGG 3 cut(s) 189, 430, 498
Eco47I GGWCC 2 cut(s) 83, 324
Eco81I CCTNAGG 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 662
EcoO65I GGTNACC 1 cut(s) 662
EcoT14I CCWWGG 3 cut(s) 189, 430, 498
ErhI CCWWGG 3 cut(s) 189, 430, 498
FaeI CATG 4 cut(s) 102, 254, 322, 613
FatI CATG 4 cut(s) 98, 250, 318, 609
Fnu4HI GCNGC 5 cut(s) 210, 213, 476, 546, 696
Fsp4HI GCNGC 5 cut(s) 210, 213, 476, 546, 696
FspBI CTAG 1 cut(s) 576
GlaI GCGC 2 cut(s) 460, 479
GluI GCNGC 5 cut(s) 210, 213, 476, 546, 696
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 593
HhaI GCGC 2 cut(s) 461, 480
Hin1II CATG 4 cut(s) 102, 254, 322, 613
Hin6I GCGC 2 cut(s) 459, 478
HinP1I GCGC 2 cut(s) 459, 478
HinfI GANTC 8 cut(s) 130, 148, 182, 203, 280, 443, 533, 556
Hpy166II GTNNAC 2 cut(s) 290, 421
Hpy188I TCNGA 2 cut(s) 285, 348
Hpy188III TCNNGA 4 cut(s) 152, 251, 274, 610
Hpy8I GTNNAC 2 cut(s) 290, 421
HpyAV CCTTC 3 cut(s) 74, 280, 609
HpyCH4IV ACGT 2 cut(s) 368, 415
HpyCH4V TGCA 4 cut(s) 163, 173, 302, 314
HpyF3I CTNAG 3 cut(s) 282, 624, 639
HpySE526I ACGT 2 cut(s) 368, 415
Hsp92II CATG 4 cut(s) 102, 254, 322, 613
HspAI GCGC 2 cut(s) 459, 478
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 3 cut(s) 502, 692, 703
LpnPI CCDG 4 cut(s) 42, 165, 575, 611
Lsp1109I GCAGC 5 cut(s) 196, 199, 462, 557, 707
LweI GCATC 2 cut(s) 72, 150
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 368, 415
MaeIII GTNAC 2 cut(s) 52, 662
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 4 cut(s) 29, 125, 418, 475
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 1 cut(s) 19
MluCI AATT 4 cut(s) 164, 254, 570, 709
MlyI GAGTC 3 cut(s) 142, 212, 274
MmeI TCCRAC 2 cut(s) 561, 675
MnlI CCTC 4 cut(s) 315, 448, 633, 648
MseI TTAA 2 cut(s) 257, 384
MslI CAYNNNNRTG 1 cut(s) 119
MunI CAATTG 1 cut(s) 164
MvnI CGCG 1 cut(s) 461
NdeII GATC 1 cut(s) 19
NlaIII CATG 4 cut(s) 102, 254, 322, 613
OliI CACNNNNGTG 1 cut(s) 119
PagI TCATGA 2 cut(s) 250, 609
PfeI GAWTC 5 cut(s) 130, 182, 443, 533, 556
PflFI GACNNNGTC 1 cut(s) 616
PkrI GCNGC 5 cut(s) 211, 214, 477, 547, 697
PleI GAGTC 3 cut(s) 142, 211, 274
PpsI GAGTC 3 cut(s) 142, 211, 274
Ppu21I YACGTR 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 662
PspPI GGNCC 2 cut(s) 83, 324
PsuI RGATCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 257, 384
SatI GCNGC 5 cut(s) 210, 213, 476, 546, 696
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 2 cut(s) 83, 324
SchI GAGTC 3 cut(s) 142, 212, 274
SetI ASST 7 cut(s) 371, 379, 418, 500, 601, 664, 700
SfaNI GCATC 2 cut(s) 72, 150
SinI GGWCC 2 cut(s) 83, 324
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 4 cut(s) 164, 254, 570, 709
SspMI CTAG 1 cut(s) 576
StyI CCWWGG 3 cut(s) 189, 430, 498
TaiI ACGT 2 cut(s) 371, 418
TaqII GACCGA 1 cut(s) 662
TasI AATT 4 cut(s) 164, 254, 570, 709
TfiI GAWTC 5 cut(s) 130, 182, 443, 533, 556
Tru1I TTAA 2 cut(s) 257, 384
Tru9I TTAA 2 cut(s) 257, 384
TseI GCWGC 5 cut(s) 209, 212, 475, 545, 695
TspDTI ATGAA 4 cut(s) 30, 239, 267, 546
Tth111I GACNNNGTC 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 83, 324
XapI RAATTY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.